Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0740 ATGGACCACGGCGTCCAAGCCATCTTCGCCGCCATCGGCAGCTTCATCGTCGTCACGCTCCTCCTCGCCGCCGCCATCCTCTTCTGCCAGCACCGCAAATCCACCAAATCCCGAACCCGCCGCAACAACCAGATCCGAGCCCGCCCTCTCCGAAACCCCAACCCCAGCTCCTCCCTCTCCATCGTCGACGCCAGCTGGTCCTGGGATCCCAAACTCAAGATCTCCATGGAAGAACTCTCCCGCGCCACAGAAAACTTCTCCCCGCGCCTAATTGTCGGCGACGGCAGCTTCGGCCTAGTCTACAAGGCTCGCCTCTCCACCGGCGCCGTCGTCGCCGTCAAGAAGCTCTCCCCCGACGCCTTCCAAGGCTTCCGTGAGTTCGCGGCGGAGATGGAAACTCTCAGCAAGCTCGGCCACCGCAACATCGTGAAGATCCTCGGGTACTGGGCCTCCGGCCCGGAACGGTTACTCGTCTACGAGTTCATCGAGAAAGGGAACCTTGACCAGTGGCTTCACGGGCACTCATCAAACGACGACGTTTTCCGCTGCTTCCCGTTGACGTGGGTTCACCGGGTCAACATCATGCGCGGTGTGGCCCATGGGCTTTGCTATCTTCACGGGCTTGACAAGCCCATCATCCATCGAGACATCAAGGCTAGCAATGTGTTATTGGACTCTGAATTTCAGGCCCATATAGCTGATTTTGGGCTGGCCCGGAGAATAGATACCTCGCATTCGCACGTGTCAACGCAGTTCGCGGGAACTATAGGGTACATGCCCCCGGAGTATAGGGATGGTGTCCTTGTGGCGAATAAGAAGGTGGATGTGTATAGTTTTGGGGTGTTGATGATGGAAACCGCGTCGGGGCACCGGCCCAATTTGGCGGTGAGGTTCGACGGGGTGGACATTGGGCTGGTCCAGTGGGCTAGGAAGATGAAGGAGCAGGGGGCTGAGATGAAAATGGTGGATGAGAAGATTTCAAGAGATGAAGAAGGGTTGAGGGAAGAAAGTGTTAAGGAGTATATACGCATTGCTTGTATGTGTGCTGGTGAGTTGCAAAAGGAAAGGCCTCAAATGGTTGAGGTTGTTAAATTGTTGGAATCAATGCCCCACTTTGATTATCAAAACGATGTAAATAAAATAGCTACATAG 1152 0.553 MDHGVQAIFAAIGSFIVVTLLLAAAILFCQHRKSTKSRTRRNNQIRARPLRNPNPSSSLSIVDASWSWDPKLKISMEELSRATENFSPRLIVGDGSFGLVYKARLSTGAVVAVKKLSPDAFQGFREFAAEMETLSKLGHRNIVKILGYWASGPERLLVYEFIEKGNLDQWLHGHSSNDDVFRCFPLTWVHRVNIMRGVAHGLCYLHGLDKPIIHRDIKASNVLLDSEFQAHIADFGLARRIDTSHSHVSTQFAGTIGYMPPEYRDGVLVANKKVDVYSFGVLMMETASGHRPNLAVRFDGVDIGLVQWARKMKEQGAEMKMVDEKISRDEEGLREESVKEYIRIACMCAGELQKERPQMVEVVKLLESMPHFDYQNDVNKIAT* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0740 383 Gene3D Phosphorylase Kinase; domain 1 53 161 - -
Lja5g0740 383 Gene3D Transferase(Phosphotransferase) domain 1 162 381 - -
Lja5g0740 383 Pfam Protein tyrosine and serine/threonine kinase 92 366 IPR001245 GO:0004672|GO:0006468
Lja5g0740 383 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 368 - -
Lja5g0740 383 CDD STKc_IRAK 92 369 - -
Lja5g0740 383 SUPERFAMILY Protein kinase-like (PK-like) 60 367 IPR011009 -
Lja5g0740 383 PANTHER OS01G0253100 PROTEIN 1 368 IPR045271 GO:0004714|GO:0006468
Lja5g0740 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Lja5g0740 383 SMART serkin_6 86 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0740 383 ProSiteProfiles Protein kinase domain profile. 86 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0740 383 MobiDBLite consensus disorder prediction 38 57 - -
Lja5g0740 383 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0740 Lja-Chr5 6815278 6816767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0740 70 369 Receptor kinase-like Gene Family AT5G07280 43.854 1.23e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lja5g0740 PK_Tyr_Ser-Thr 3.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0740 - - lja:Lj5g3v1927340.1 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0740 5 6815278 6816767 Lja5g0740 5 6815278 6816767 ECH