Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0739 ATGGATCCTGCTGCTGCTGCTGAAGAATTACCTCCATATATTCATATAACTCAGAATGATTTTTTTACGCGAAGGCATAAGAAACAGAAGGAGGAGGATATTGCTATATGTGAATGCAGGTATAACTCTGATGACCCCGATAGTGCGTGTGGGGATAGGTGCCTGAATGTGTTAACCAGCTCTGAATGCACCCCTGGTTATTGCCCTTGTGGTATCTTTTGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCTAAAACAAAGTTGTTCAAAACTGAAGGCCGGGGGTGGGGTCTTTTGGCTGATGAGGACATTAAGGAAGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCGTGGAAAGAAGCCAAGCGTAGATCGCATGCTTATGAAGTTCAAGGTCTTAAGGATGCATTTATTATTTGCCTAAATGCATCTGAATCTATTGATGCAACACGGAAAGGAAGCCTTGCGAGATTTATTAATCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCTTGGGTGAAACAAGAGTTGGCATATTTGCAAAGCATGATATTTCAATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCAGTCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGCGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGACAGGTACTCTGTTGAGAAAATTCCTGTATATGACTCTGCAGAGGATGAAGTGATGTCGGATGTTAATGGACAAACTGCACATTCCATGGATGTTATGCCTAAAGCTGAGCAGTTATCGGAGTCCTCGGATGTTCAGCTGATTGATTCAGTTCAGATGAACGGTTTAGATGTCAAGAAGATTAAAACTGATGTAGCAGGTGAAGATATGAAGTTGTACTCCATAGATACCGAGCCGGCCCTTGAGCAAAAAAATGCGATGATATCACGTATCCGAAGTAATGCTGCAGGCAGAAACTATTCCATTGGACCTAGGTCCATGTCTACCAAAAGATCGAAGGCATATAATGGGGGAAAGTTTAAAAACATCATTAAGAAGAAAGTTGATGTAAAGTTTGCAGTTGGCCTCTTAACATCAAAGGAAGCACAAGAGGAGATTTTAGATTCTGAGAGAAGAAAAACCGATGCTACATCTGGTCTTGATTCCTTATACAACGAAATACGGCCCGCCATCGAAGAACATGAGAGGGATAGCCAAGACAGTGTATCTACGACAGTTGCAGAGAAGTGGATACAGGCTTGCTGCCTAAAATTGAAGGCGGAGTTTGACCTTTACTCGGCAATCGTCAAAAATGTTGCTTGCACTGCTCAAGGGGTACCTGGCCAAGCAAAACCTACTGAAGTAGATAATGAAAACGAAATCAAGCTTTTGACAGATTGA 1446 0.4136 MDPAAAAEELPPYIHITQNDFFTRRHKKQKEEDIAICECRYNSDDPDSACGDRCLNVLTSSECTPGYCPCGIFCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKEGQFVIEYCGEVISWKEAKRRSHAYEVQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGETRVGIFAKHDISIGTELAYDYNFEWFGGAKVRCLCGAVKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEVMSDVNGQTAHSMDVMPKAEQLSESSDVQLIDSVQMNGLDVKKIKTDVAGEDMKLYSIDTEPALEQKNAMISRIRSNAAGRNYSIGPRSMSTKRSKAYNGGKFKNIIKKKVDVKFAVGLLTSKEAQEEILDSERRKTDATSGLDSLYNEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSAIVKNVACTAQGVPGQAKPTEVDNENEIKLLTD* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0739 481 SMART set_7 85 208 IPR001214 GO:0005515
Lja5g0739 481 MobiDBLite consensus disorder prediction 461 481 - -
Lja5g0739 481 PANTHER SET DOMAIN PROTEINS 7 420 - -
Lja5g0739 481 Pfam SET domain 96 202 IPR001214 GO:0005515
Lja5g0739 481 ProSiteProfiles SET domain profile. 85 202 IPR001214 GO:0005515
Lja5g0739 481 ProSiteProfiles AWS domain profile. 32 83 IPR006560 GO:0005634|GO:0018024
Lja5g0739 481 SMART shorttest3 32 84 IPR006560 GO:0005634|GO:0018024
Lja5g0739 481 Gene3D SET domain 2 237 IPR046341 -
Lja5g0739 481 Pfam AWS domain 44 82 IPR006560 GO:0005634|GO:0018024
Lja5g0739 481 SMART PostSET_3 209 225 IPR003616 -
Lja5g0739 481 ProSiteProfiles Post-SET domain profile. 209 225 IPR003616 -
Lja5g0739 481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 7 420 - -
Lja5g0739 481 SUPERFAMILY SET domain 11 222 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0739 Lja-Chr5 6801805 6808652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0739 67 224 C2H2 Transcription Factor Family AT2G23740 34.807 1.53e-21 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja5g0739 SET 1.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0739 - - gmx:100775294 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0739 5 6801805 6808652 Lja5g0739 5 6801805 6808652 ECH