Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0736 ATGTGCTTTCCAACGGTGGCGCACCAAAGGGGTTCAAGCGAGTTTGTGAGGTTCACGGCGGAGCAACACGGCGGTGATGAGGAAACGGAAGGTAGTTCAAGACAAGGTGATGGTGATGGTAGTGGTGGAAGTGGAAGCTCAGGGCCATCATCATCACAGTTCCAACTGGTGCAGCAGCAACAAGGGAAGGTGGCAATGCCTGGTCCTCAAGTTTCGGTGCCGACCCAGGCCCACACCGAGTGGGTCCCAAGAAGTGGTTTTCCTTTGATGTCACGTTTTGTCCTTGACCACCATGGCCCTTCTTCTCCTCGTTTGTATTCTTCTTCATCTTCTTCTTCCTCTTCTTCTGTTTCTGGTCCTCTATTGGGATTTTCTGCTACTTCCTCTGCTTCTGGTTCATGGGTTGGGCACAAAAGAGGGCGTGAAGAAACTGGTGCTGGTTCTTCTTCTCAATTGTTACAAGATGTCACTGCACCTAACAGAAACATTGGTGACTTCAGAGTACCTTCACAACAATCCCAACCACAATCATCATCCTCAGCAACAGAAGCAGCTACAACAGCTACATCTAGTGAAGCATCAGCATCACCATCTGAAGAAAGTGGTGAGAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGACCGTGGGGGAAATGGGCAGCGGAGATTCGTGATCCTCACAAAGCAGCTAGAGTGTGGCTTGGAACATTCGACACAGCAGAAGCTGCAGCAAGAGCTTATGATGATGCTGCATTGAGGTTCAGAGGAAACAGAGCAAAACTCAATTTCCCAGAAAATGTAGCACCAGTAGCACCAGTAAGGCCGATGAATGTTCATGCTTTTCCGACCATCAGGACCACGGTTTCTGCTTCTCCGGCAACCCTTTATTCCCCGGCGCCGCCGCAGCCTCCGATTTTTCCTTTTCAGGGTCAGGGGACTTCTGATTCGATCAGAGACTATTGGGAATATTCTCAGCTGCTGAAGGGTTCAGGGGACATCCATGGACTTGAGCAATGGTTCTATGAATCACAAATGGCAGCGCTTCATTCTTCACAACAAATGGCAGCACTTCATTCTTCTTCTTCTTCATTGTTATCTCCATCACAGTCGCTTTCTTTGTCATCATCTTCATCGCCAACTGCATTTTCACCCTCCAGTCAACTCTCCTCTGCTTCATTTCCCCTGTTTTCTGGTCAGCAAGTGGGGCTTTTCCGGCCGCCAGGCGACCCCTCTCGCGGCGGCGGTGACGGTGGTAGTGGATCTGGTTTCCCACCTTCAACATGGTCAGATACAAGTGGCTATCCACCACCTCCTGGTTGA 1320 0.503 MCFPTVAHQRGSSEFVRFTAEQHGGDEETEGSSRQGDGDGSGGSGSSGPSSSQFQLVQQQQGKVAMPGPQVSVPTQAHTEWVPRSGFPLMSRFVLDHHGPSSPRLYSSSSSSSSSSVSGPLLGFSATSSASGSWVGHKRGREETGAGSSSQLLQDVTAPNRNIGDFRVPSQQSQPQSSSSATEAATTATSSEASASPSEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDDAALRFRGNRAKLNFPENVAPVAPVRPMNVHAFPTIRTTVSASPATLYSPAPPQPPIFPFQGQGTSDSIRDYWEYSQLLKGSGDIHGLEQWFYESQMAALHSSQQMAALHSSSSSLLSPSQSLSLSSSSSPTAFSPSSQLSSASFPLFSGQQVGLFRPPGDPSRGGGDGGSGSGFPPSTWSDTSGYPPPPG* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0736 439 SUPERFAMILY DNA-binding domain 207 265 IPR016177 GO:0003677
Lja5g0736 439 Gene3D AP2/ERF domain 206 266 IPR036955 GO:0003700|GO:0006355
Lja5g0736 439 MobiDBLite consensus disorder prediction 102 134 - -
Lja5g0736 439 ProSiteProfiles AP2/ERF domain profile. 207 264 IPR001471 GO:0003700|GO:0006355
Lja5g0736 439 Pfam AP2 domain 207 256 IPR001471 GO:0003700|GO:0006355
Lja5g0736 439 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 91 398 - -
Lja5g0736 439 MobiDBLite consensus disorder prediction 20 34 - -
Lja5g0736 439 MobiDBLite consensus disorder prediction 1 77 - -
Lja5g0736 439 MobiDBLite consensus disorder prediction 145 197 - -
Lja5g0736 439 MobiDBLite consensus disorder prediction 399 439 - -
Lja5g0736 439 PRINTS Ethylene responsive element binding protein signature 230 246 IPR001471 GO:0003700|GO:0006355
Lja5g0736 439 PRINTS Ethylene responsive element binding protein signature 208 219 IPR001471 GO:0003700|GO:0006355
Lja5g0736 439 PANTHER DNA-BINDING DOMAIN 91 398 IPR044808 GO:0003700|GO:0009873
Lja5g0736 439 MobiDBLite consensus disorder prediction 35 77 - -
Lja5g0736 439 MobiDBLite consensus disorder prediction 99 212 - -
Lja5g0736 439 SMART rav1_2 207 270 IPR001471 GO:0003700|GO:0006355
Lja5g0736 439 CDD AP2 215 266 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0736 Lja-Chr5 6771171 6773656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0736 193 267 AP2-EREBP Transcription Factor Family AT2G33710 73.333 5.08e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja5g0736 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0736 - - lja:Lj5g3v1937400.1 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0736 5 6771171 6773656 Lja5g0736 5 6771171 6773656 ECH
Lja2g2787 2 42633563 42635788 Lja5g0736 5 6771171 6773656 PCT