Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0734 ATGGCTTATATGAGTTGTTCGGATATTGGAGTAAGCGGCCCAACCACAAACAACAATAAAGCCATCGAGAAAATAGGGTTTAGGTCAGTCAGTGCTTGGAAGCAGGGACTTCACTCGCGGCTGCAAAGGAGGAGAAGGAGAAGGATGTCTCACAGGAAGTTCGAACACCCCAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGTCATTCCCTAAGGATGACCCTTCCAAATCACCCAAGCTTACTGCCTTCTTGGGTTACAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAAGCTTCACAAGAAGGAGACTTGCGAGCCAGTTACAATTATCGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGCTATGTGAAAACTCCTCGTGGTATGCGAACATTGAACACTGTTTGGGCTCAGCATTTGAGTGAGGAAGTGAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCACCAAGTACTCCAAGCAGTTTGAGTCCGAAGAAGGGAAGAAAAACGTTCAGGCCCAGCTGGAGAAAATTAAGAAGTATGCAACTGTTGTCCGTGTGTTGGCTCACACTCAGATCAGAAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCACATCATGGAAATTCAGGTCAATGGTGGGACTGTGGCACAGAAGGTGGACTTTGCTTACAGTTTCTTCGAGAAACAGGTTCCTATTGATGCTGTGTTCCAGAAGGATGAGATGATTGACATCATTGGGGTGACCAAAGGTAAGGGTTATGAGGGTGTTGTGACCCGTTGGGGTGTTACCCGTCTTCCTCGCAAGACTCACAGGGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCATCCAGCAAGAGTTTCTTTCACTGTTGCCAGGGCTGGTCAAAATGGATACCATCACCGAACTGAGCTGAACAAGAAGATTTACAGGCTTGGCAAGGCTGGAGACGAGTCGCACTCAGCCATTACTGAGTTTGATAGGACTGAGAAGGAGATTACCCCAATGGGTGGATTCCCACACTACGGTATTGTGAAGGATGATTTCCTCATGATCAAAGGAGGCTGTGTTGGTCCCAAGAAAAGGGTTATCACATTGCGTCAATCCCTGCTTAAGCAGACTTCTCGTGTTGCTTTGGAGGAGATCAAACTCAAGTTTATCGACACCTCTTCAAAGTTTGGACATGGGCGCTTCCAGTCCACTCAAGAGAAGCAGAAGTTCTATGGACGCCTCAAAGCTTAA 1314 0.4756 MAYMSCSDIGVSGPTTNNNKAIEKIGFRSVSAWKQGLHSRLQRRRRRRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPSKSPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGMRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKQFESEEGKKNVQAQLEKIKKYATVVRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTVAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYRLGKAGDESHSAITEFDRTEKEITPMGGFPHYGIVKDDFLMIKGGCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQSTQEKQKFYGRLKA* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0734 437 Gene3D - 131 255 - -
Lja5g0734 437 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 49 437 - -
Lja5g0734 437 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 49 437 IPR045077 GO:0003735|GO:0005840|GO:0006412
Lja5g0734 437 MobiDBLite consensus disorder prediction 38 55 - -
Lja5g0734 437 ProSitePatterns Ribosomal protein L3 signature. 260 283 IPR019926 -
Lja5g0734 437 MobiDBLite consensus disorder prediction 38 62 - -
Lja5g0734 437 Gene3D Ribosomal protein L3, domain 3 49 322 IPR044892 -
Lja5g0734 437 Pfam Ribosomal protein L3 49 418 IPR000597 GO:0003735|GO:0005840|GO:0006412
Lja5g0734 437 SUPERFAMILY Translation proteins 52 418 IPR009000 -
Lja5g0734 437 Gene3D Translation factors 92 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0734 Lja-Chr5 6744427 6753615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0734 49 435 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.305 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0734 K02925 K10999 gmx:100806786 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0734 5 6744427 6753615 Lja5g0734 5 6744427 6753615 ECH