Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0725 ATGTCTCTTGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGTTGAATACCAACGTTGATGGGAAACAGAAGATCATGTTTGCTCTGACCTCCATCAAGGGTATTGGAAGGAGATTCGCCAACATCTGTTGCAAGAAGGCTGATGTCGACATGAACAAGAGCAGAGCTGGTGAGTTGAGTGCTGCGGAATTGGACAATGTGATGACTGTTGTTGCCAATCCTAAGCAATTCAAGATCCCAGATTGGTTCCTCAACAGGAAGAAGGACTACAAGGATGGCAAGTACCATCAGGTTGTCTCCAATGCCCTCGACATGAAGCTCAGGGATGATTTGGAGAGGCTCAAGAAAATCAGGAATCATCGAGGTTTGAGACACTACTGGGGTCTTCGAGTGCGTGGCCAGCATACCAAGACTACTGGTCGTAGGGGTAAAACGGTTGGTGTCTCAAAGAAGCGCTGA 462 0.4805 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANICCKKADVDMNKSRAGELSAAELDNVMTVVANPKQFKIPDWFLNRKKDYKDGKYHQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0725 153 SUPERFAMILY S13-like H2TH domain 13 149 IPR010979 GO:0003676
Lja5g0725 153 Hamap 30S ribosomal protein S13 [rpsM]. 12 153 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja5g0725 153 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 1 153 - -
Lja5g0725 153 ProSiteProfiles Ribosomal protein S13 family profile. 15 146 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja5g0725 153 Gene3D - 1 81 - -
Lja5g0725 153 ProSitePatterns Ribosomal protein S13 signature. 122 135 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja5g0725 153 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 153 - -
Lja5g0725 153 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 4 153 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja5g0725 153 Pfam Ribosomal protein S13/S18 14 143 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja5g0725 153 Gene3D 30s ribosomal protein s13, domain 2 93 143 IPR027437 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0725 Lja-Chr5 6676177 6678010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0725 1 153 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 93.464 3.39e-105 295