Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0721 ATGTCATTCCGCAGCATAGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGACGGAGTTTTGATGTAATACTTCCTGGGCATAGCAGGAGCAAGTCACGGAGTTCGGTCCATGAGTTGCACGACCAGCCTCTGGTTATACAGAGCAGTCGATGGGCTAGCCTTCCCCCTGAACTCCTTCGCGATGTAATTAAGAGATTGGAAACAAATGAAAGTGCATGGCCTGGTCGTAAGCACGTGGTTGCGTGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCGGCAGTCCTGAATTCTGTGGGAAGATTACTTTCCCTGTTTCCTTAAAGCAGCCTGGGTATAGGGATGGGCCAATCCAGTGTTTCATCAAGAGAGACAAATCTAAACTGACATACCATCTCTTCCTTTGTCTTAGTCCCGCCTTGCTTGTTGAAAATGGGAAGTTTCTTCTCTCTGCAAAACGGACCAGAAGAACGACTTGCACAGAGTACATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGCACTTACATTGGAAAATTGAGGTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACTCAGCCTCCCTATAACAATGCTCAGCTATCTCCACCAGGCCGCAGCCGGAGGTTTAACTCGAAAAAGGTTTCCCCGAAGGTCCCTAGCGGCAGCTACAACATCGCCCAGGTCACCTATGAGTTGAACGTCCTCGGTACTAGGGGCCCGCGAAGGATGAATTGTACTATGCACTCAATCCCTGCATCATCCCTTGATCTCGGTGGCTCTGTCCCGGGCAAGCCAGAGCTCCTTCCGCGTGCCCTTGAGGACTCTTTCCGGAGCATATCATTCGCAAGATCAATCGACAACTCAACCGAGTTCAGCAGCGCCAGGTTCTCAGACATAATCGGAGCTGGCAATGAGGAGGAGGAGGAGGAGGGAAAGGAGAGACCCTTGGTTCTTAAGAACAAGTCTCCGAGATGGCATGAACAGCTGCAATGCTGGTGTCTCAACTTCAGGGGCCGAGTGACTGTCGCGTCGGTCAAGAATTTCCAGCTGATTGCTGCAACACAGCCTGCAAGTGGTGGTGGAGCTCCTCCAACAGGAACAGGAGCGGCACCACCATCTCAGCCACCATCTGACCCTGACAAGATTATTCTTCAGTTCGGGAAGGTTGGCAAGGACATGTTTACAATGGACTATCGGTACCCGCTGTCTGCATTTCAGGCTTTTGCCATTTGCTTGACTAGCTTCGACACAAAATTGGCATGTGAATAG 1305 0.4904 MSFRSIVRDVRDGFGSLSRRSFDVILPGHSRSKSRSSVHELHDQPLVIQSSRWASLPPELLRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVGSPEFCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFARSIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0721 434 Gene3D Tubby Protein; Chain A 112 428 IPR025659 -
Lja5g0721 434 Pfam F-box domain 53 99 IPR001810 GO:0005515
Lja5g0721 434 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Lja5g0721 434 Pfam Tub family 114 429 IPR000007 -
Lja5g0721 434 ProSitePatterns Tub family signature 2. 419 434 IPR018066 -
Lja5g0721 434 SUPERFAMILY Tubby C-terminal domain-like 102 434 IPR025659 -
Lja5g0721 434 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 434 - -
Lja5g0721 434 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lja5g0721 434 PRINTS Tubby superfamily signature 391 410 IPR000007 -
Lja5g0721 434 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Lja5g0721 434 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Lja5g0721 434 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lja5g0721 434 PRINTS Tubby superfamily signature 412 434 IPR000007 -
Lja5g0721 434 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Lja5g0721 434 PANTHER TUBBY-RELATED 1 434 - -
Lja5g0721 434 MobiDBLite consensus disorder prediction 368 391 - -
Lja5g0721 434 Gene3D - 48 99 - -
Lja5g0721 434 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0721 Lja-Chr5 6612493 6614805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0721 1 434 TUB Transcription Factor Family AT1G76900 70.370 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lja5g0721 Tub 1.6e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0721 K19600 - gmx:100817532 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0721 5 6612493 6614805 Lja5g0721 5 6612493 6614805 ECH
Lja2g2760 2 41969046 41973442 Lja5g0721 5 6612493 6614805 PCT