Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0719 ATGATGCAGCTGGGAGAACAAGAATCAGTGTTGGACACCTCCATGCCGCTGCCGCTGCCGCTGCCACCACAGGATGGCGCTAACGGCGGTGAGGAGAAAGGAAGAGAAGGCAGTGGTGGTGGAGAGTTAGATGAAGATGGTGGTGACAAGATCGGTAGCGGTGGAAGCCGGTGGCCCCGGCAAGAGACGTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCTGTGTTTCGTGATTCAAGTCTTAAGGGTCCACTCTGGGAAGAAGTTTCAAGGAAACTAGCAGGATTGGGTTATCACAGAAGCGCAAAGAAGTGCAAGGAGAAGTTTGAGAATGTGTACAAGTACCACAAAAGAACCAAAGAGAGTAGAAGTGCCAAACCAGAAGGAAAAACTTATAGATTCTTTGATCAGTTACAAGCCCTAGAGAAACAATTCTCACTCTCTTACCCTCCACAACCGCAACTGCAACCGCAACCACCAACTCCACAACCTAGTTTGCCAACAAGGCCTAGTGATGGTACAACAGTCTCTCATGTCACCACAACTGTTCCATCCACAAACCTTCCTCCTACAATAATTTCCCCACCACAACCACCAACAAATGCTGTTACCACCACAACCAATGCTGCTACCACCACAACCATAACCTGTCCAACAGTAGTAGCCAACCCTAGAAACACATCACAAGCTGCCACTGCCGCCGCCACCACTCCCACCAACAACAATAATGTTCCATATTCTTTGCCCAATATGAACCTTTTCTCCTCATCCAACTCCACCTCTTCTTCTACAGCCTCCGATGAAGACCTGGAAGAGAAGTACAGGAAGAAGAGAAAATGGAAGGACTACTTCAGGAGGCTCACGAGGCAGGTCTTGTCCAAGCAAGAAGAAATGCAGAAGAGGTTCCTGGAAGCCATAGACAAGCGTGAGAGAGAACAAATCGCGCAGCAAGAAGCTTGGAGGGCGCAAGAAATGGCAAGGATCAATAGAGAACATGACCTTCTTGTTCAAGAAAGATCAACAGCGGCTGCAAAAAATGCAGCGGTCATTGCATTTTTGCAAAAGTTATCAGGTCAGCAGAGCCCGATAACACAGCCTGCAGGGGCCAACTTTCTCCCACAAACACCGCAGCCACAATCGCAACCGCAACAATCACAGCAACTGCCACAATTGCATCTGCAACTGCAACCACAACAGCAACAACCACAACCACTAGTGTTGCCGCCACCAGTATCAAAACCACAGCCACCACAACAACCTCACCAGCAACAGCTAGTTCCACATCCATTGGCTTCAAACAACAACATGGAAATCCAAAGCATGAGCAATGGTCATAACAATGGCACTCCACTAAGCTCTTCTAGGTGGCCAAAAGCTGAAGTTCATGCTCTCATCAAGATAAGGACAAGTCTTGAAGCCAAGTATCAAGAAAATGGACCAAAAGCTCCATTGTGGGAAGAGATATCAGCGGCGATGCAGAGGATTGGGTACAACAGGAATGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAAGAAAGCAACAAGCAGAGGCGTGAAGATAGCAAGACATGTCCCTATTTTCACGAACTTGAAGCCCTCTACAAGGAAAAGAGCAAAACACAGAACCTATTTGGTGCTTCAATCCACAACATGAGGACCAATGAGATGATGGAGCCATTGATGGTGCAGCCGGAGCAGCAGTGGAGGCCTCCCCCTCAGTATGAAGAATCGGTTAAGAAGAATGATGAAACAAAAGAAAGAGAGCAGGAAGAAGAAGAGGAAGATTATGATGAAGAAGAAGGAGAAGGAGATAGCATGCAAGAAGATGGAGGAGGGAACCGTTATGAGATTGTGACAAATAAACTTTCTTCTGTGGACACCGTTGAATGA 1917 0.4737 MMQLGEQESVLDTSMPLPLPLPPQDGANGGEEKGREGSGGGELDEDGGDKIGSGGSRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAGLGYHRSAKKCKEKFENVYKYHKRTKESRSAKPEGKTYRFFDQLQALEKQFSLSYPPQPQLQPQPPTPQPSLPTRPSDGTTVSHVTTTVPSTNLPPTIISPPQPPTNAVTTTTNAATTTTITCPTVVANPRNTSQAATAAATTPTNNNNVPYSLPNMNLFSSSNSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLSKQEEMQKRFLEAIDKREREQIAQQEAWRAQEMARINREHDLLVQERSTAAAKNAAVIAFLQKLSGQQSPITQPAGANFLPQTPQPQSQPQQSQQLPQLHLQLQPQQQQPQPLVLPPPVSKPQPPQQPHQQQLVPHPLASNNNMEIQSMSNGHNNGTPLSSSRWPKAEVHALIKIRTSLEAKYQENGPKAPLWEEISAAMQRIGYNRNAKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELEALYKEKSKTQNLFGASIHNMRTNEMMEPLMVQPEQQWRPPPQYEESVKKNDETKEREQEEEEEDYDEEEGEGDSMQEDGGGNRYEIVTNKLSSVDTVE* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0719 638 CDD GT1 56 121 - -
Lja5g0719 638 MobiDBLite consensus disorder prediction 1 57 - -
Lja5g0719 638 Gene3D - 58 119 - -
Lja5g0719 638 Gene3D - 457 518 - -
Lja5g0719 638 Pfam Myb/SANT-like DNA-binding domain 455 542 IPR044822 -
Lja5g0719 638 Pfam Myb/SANT-like DNA-binding domain 56 142 IPR044822 -
Lja5g0719 638 SMART sant 54 116 IPR001005 -
Lja5g0719 638 SMART sant 453 515 IPR001005 -
Lja5g0719 638 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 27 628 - -
Lja5g0719 638 MobiDBLite consensus disorder prediction 596 615 - -
Lja5g0719 638 MobiDBLite consensus disorder prediction 425 455 - -
Lja5g0719 638 CDD GT1 455 520 - -
Lja5g0719 638 MobiDBLite consensus disorder prediction 574 638 - -
Lja5g0719 638 PANTHER - 27 628 - -
Lja5g0719 638 MobiDBLite consensus disorder prediction 29 51 - -
Lja5g0719 638 ProSiteProfiles Myb-like domain profile. 56 114 IPR001005 -
Lja5g0719 638 MobiDBLite consensus disorder prediction 150 205 - -
Lja5g0719 638 MobiDBLite consensus disorder prediction 153 168 - -
Lja5g0719 638 MobiDBLite consensus disorder prediction 169 189 - -
Lja5g0719 638 ProSiteProfiles Myb-like domain profile. 449 513 IPR001005 -
Lja5g0719 638 MobiDBLite consensus disorder prediction 365 402 - -
Lja5g0719 638 MobiDBLite consensus disorder prediction 403 424 - -
Lja5g0719 638 MobiDBLite consensus disorder prediction 365 456 - -
Lja5g0719 638 Coils Coil 583 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0719 Lja-Chr5 6590787 6594122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0719 48 576 Trihelix Transcription Factor Family AT1G76890 46.382 2.16e-137 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja5g0719 Myb_DNA-bind_4 7.2e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0719 - - gmx:100799041 705.286