Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0718 ATGCTGGGGGACTCAGCTGTGTTGAGTGGCGGTGGTGGTGGCTCCGGGGATGCTGCGGCGGCGGCAGCGGCAGCAGGAGGTGGAGGAGCTGAGAGGACTGCAACAAGTGGTGGTGCGGTTGGATCAAATTCAGGCGATGATGAGAGGGGGAGAATTGAAGAAGGTGAACGTAGCTTCGGCGGCAACCGGTGGCCGCGGCAAGAGACTTTAGCGCTGTTACGGATACGTTCCGACATGGACGTGGCGTTTCGAGATGCAGCTGTTAAAGGTCCCTTGTGGGAAGAAGTCTCCAGGAAACTGGCTGAGCTTGGTTATCACAGAAATGCCAAGAAGTGCAAAGAGAAATTTGAGAACGTGTACAAGTACCACAAAAGAACCAAAGAAGGTAGAAGTGGGAAATCAGATGGCAAAACTTATCGTTTCTTTGATCAATTACAAGCACTTGAGAATCACCCTTCACTTCAATCACCAAACTCATCAAATTCAAGACCACTACCGCCGCCGCCACCGCAACCACCAGCACTAGTGGTAACACCTGCAGCAACAACAGTGCCAATGCCACTACCCCATGTCAGTACTGTTCCATCAACAACTACCACACCACCGAATATACCCATGCCTCAAGGCATTGCTATTTCCACCACCCCATCAATGAACCTCACCAACACCATCCCTTCATTCCCAACATCAAACCCTACAAACTTCCCTCCATCAACAGCAAACCCTTCCAACACAACCACCCCAATTTCCTTCCCTACAATTCCAATGGATCTCTTGTCCAACTCCACTTCTTCCTCCACCTCCTCCGATGAAACGCTCGAAGGGAGGCGGAAGAGGAAGCGGAAATGGAAGGACTTCTTTGAGAGACTCATGAAGGAAGTGGTTGAGAAGCAAGAGGACCTGCAGAAAAAATTCCTGGAAGCCGTAGAGAAGCGCGAACATGATAGAACCGCAAGGGAAGAAGCGTGGAGAGTGCAAGAGATGCAAAGGATCAATAGAGAGAGGGAAATTCTAGCACAAGAGAGATCCATTGCTGCTGCCAAAGATGCCGCTGTAATGTCTTTCTTACAGAAGATAGCTGAACAGCAAAATTTGGGACAAGCATTGAGTAACATTGTACAACCACCGCGGCCACCACAACCGGTAACACAACCAAGTGCAGCACCACCACCAGCACCAACGCCAGCACAAGGACAAGCACAAATTGTACAACAACAGCAACCAGTAGCACCAGTTACTCAACCTGGCCCGCCACCAACACAGACTGTGATGGCGGGCCAGGTTGGGTTGGTCCCACAACAAGGGGTGACTGGCATGGAAATTGTGAAAGCTGATAATGGGGAGAATTCCATGGGGGCGAGCTCTTCTAGGTGGCCAAAAGTGGAGGTTGAGGCATTGATAAAGCTGAGAACGAGCTTGGATTCAAAGTACCAAGAGAATGGACCTAAAGGCCCTCTTTGGGAGGAGATCTCAGCCTTAATGAGGAACCTTGGGTACAACAGGAATGCCAAGAGGTGCAAAGAAAAATGGGAGAACATCAACAAGTACTTTAAGAAAGTGAAGGAGAGCAACAAGAAGAGACCGGAAGATTCCAAGACTTGTCCCTATTTCCACCAGCTGGATGCGTTGTACAGGGAGAAGAAGAGTCAGGTGGTGGTGCGGCCGCCGGAGAGCTCGGCAGCGCCATTGATGGTGCAGCCGGAGCAGCAGTGGCCTCCTCAGCAGAAAATTACAAGGGATGTGACCATGGAAGACGCAGAGAATGACCCCATGGACCAGCATCATGAAGATGATGAAGACGATGTAGAAGATGAAGATGAAGAGGGTGAAAGTGGTGGTAGTGGTAGTGGTGGTGGGGGGGAATTATGA 1869 0.5051 MLGDSAVLSGGGGGSGDAAAAAAAAGGGGAERTATSGGAVGSNSGDDERGRIEEGERSFGGNRWPRQETLALLRIRSDMDVAFRDAAVKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSDGKTYRFFDQLQALENHPSLQSPNSSNSRPLPPPPPQPPALVVTPAATTVPMPLPHVSTVPSTTTTPPNIPMPQGIAISTTPSMNLTNTIPSFPTSNPTNFPPSTANPSNTTTPISFPTIPMDLLSNSTSSSTSSDETLEGRRKRKRKWKDFFERLMKEVVEKQEDLQKKFLEAVEKREHDRTAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQALSNIVQPPRPPQPVTQPSAAPPPAPTPAQGQAQIVQQQQPVAPVTQPGPPPTQTVMAGQVGLVPQQGVTGMEIVKADNGENSMGASSSRWPKVEVEALIKLRTSLDSKYQENGPKGPLWEEISALMRNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKKSQVVVRPPESSAAPLMVQPEQQWPPQQKITRDVTMEDAENDPMDQHHEDDEDDVEDEDEEGESGGSGSGGGGEL* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0718 622 ProSiteProfiles Myb-like domain profile. 62 120 IPR001005 -
Lja5g0718 622 SMART sant 60 122 IPR001005 -
Lja5g0718 622 SMART sant 454 516 IPR001005 -
Lja5g0718 622 PANTHER - 1 610 - -
Lja5g0718 622 MobiDBLite consensus disorder prediction 46 61 - -
Lja5g0718 622 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 610 - -
Lja5g0718 622 Pfam Myb/SANT-like DNA-binding domain 456 543 IPR044822 -
Lja5g0718 622 Pfam Myb/SANT-like DNA-binding domain 62 148 IPR044822 -
Lja5g0718 622 MobiDBLite consensus disorder prediction 549 622 - -
Lja5g0718 622 MobiDBLite consensus disorder prediction 591 611 - -
Lja5g0718 622 Gene3D - 64 125 - -
Lja5g0718 622 Gene3D - 458 519 - -
Lja5g0718 622 MobiDBLite consensus disorder prediction 161 176 - -
Lja5g0718 622 CDD GT1 456 521 - -
Lja5g0718 622 CDD GT1 62 127 - -
Lja5g0718 622 MobiDBLite consensus disorder prediction 374 396 - -
Lja5g0718 622 MobiDBLite consensus disorder prediction 189 270 - -
Lja5g0718 622 MobiDBLite consensus disorder prediction 371 423 - -
Lja5g0718 622 MobiDBLite consensus disorder prediction 1 64 - -
Lja5g0718 622 ProSiteProfiles Myb-like domain profile. 450 514 IPR001005 -
Lja5g0718 622 MobiDBLite consensus disorder prediction 151 279 - -
Lja5g0718 622 MobiDBLite consensus disorder prediction 563 577 - -
Lja5g0718 622 Coils Coil 284 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0718 Lja-Chr5 6571792 6575255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0718 53 571 Trihelix Transcription Factor Family AT1G76880 53.565 1.78e-164 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja5g0718 Myb_DNA-bind_4 1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0718 - - lja:Lj0g3v0130139.1 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0718 5 6571792 6575255 Lja5g0718 5 6571792 6575255 ECH