Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0717 ATGGAAGGGAATTTGTCACAGGGGGGAATAATTCAAGGTGGGAGTTCTTTTGGTGGTTTTGATTTGCCAGGATCAATTCAGGTTCATCATCATCAGGGACAGCATCCTCATGCCATGCAGCAACATCAGACTCATCCATGTCAAGGGTCTTCTGTGCATGTTCATGATGGTTTTCCACTTACAATGGGAACCTTACAGAGCAGCTGTGATCCAACCCTTTCGATGTCGGACTTTGGTAAGGGGGAAAGAGGCAAAAACTCGACGAGTGAGGAAGATGAGCCGAGCTTTAATGAGGATGGTGTTGATGGTCACCATGAAGGGGTTAGAGGTAAAAAGGGATCGCCTTGGCAGCGGGTGAAGTGGACTGATAAGATGGTAAGGCTCCTGATAACGGCTGTTTCTTATATGGGTGAGGATATAACTTCCGAAGGTGGTGGTGGCGGTGGAAGAAGGAAATTTACAGTGCTACAGAAGAAGGGTAAGTGGAAATCTGTTTCCAAGGTCATGGCTGAAAGGGGTTATCGTGTTTCACCTCAGCAATGTGAGGATAAGTTCAATGATCTTAATAAAAGGTATAAAAAGCTTAATGATATGCTAGGGAGGGGTACTTCTTGTCAGGTTGTTGAGAATCCTGCGCTTTTGGATGTAATAGAGTTTCTTTCGGAGAAAGAAAAGGACGATGTTCGAAAAATATTGAGCTCGAAACACTTGTTCTATGAAGAGATGTGCTCTTACCATAATGGTAATAGATTGCATTTACCCCATGATCCTGCATTGCAACGTTCTCTGCAGATAGCTCTCCGAAATAGAGATGACCATGATAACGATGATATCAGAAGGTTCCATCATGATGGTCACGACGAAGATGAGCAAGATGTGGAAATGGATGATCATGATGATTTTAAAGAGAATTGTTCCTCCCATGGTGATAGTAGAGGAATGTATGGACCATTAGGCGGATCTATGAAGAAATTGAAACAGGTCCAAGTCCAGGAAGATGCTAATACATTTGGTAATTCTGTAAATGGTCAAGGCTACAACAAAAGTTCACATCCCCATGGACAGGTGGTCCATTCTGATGTTAATCAAGTTTTACCTGAAGGCATGAGAGCAGCTTGGTTACAAAAGCAATGGGTTGAATCTCGCTCACTTCAGTTAGAAGAGCAAAAGGTACAGCTTCAGGTTGAGATGTTGGAACTAGAGAAACAGAGACTCAAGTGGCAGAGGTTTAGCAAGAAAAAGGACCGCGAGTTGGAAAAGCTGAGTCTAGAAAATGAAAGAATGAAGCTTGAAAATGAACGTATTGCTTTAGAACTGAAACGAAAAGAAATGGGCGCCGGCTTAAACTAG 1350 0.4289 MEGNLSQGGIIQGGSSFGGFDLPGSIQVHHHQGQHPHAMQQHQTHPCQGSSVHVHDGFPLTMGTLQSSCDPTLSMSDFGKGERGKNSTSEEDEPSFNEDGVDGHHEGVRGKKGSPWQRVKWTDKMVRLLITAVSYMGEDITSEGGGGGGRRKFTVLQKKGKWKSVSKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDVIEFLSEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQIALRNRDDHDNDDIRRFHHDGHDEDEQDVEMDDHDDFKENCSSHGDSRGMYGPLGGSMKKLKQVQVQEDANTFGNSVNGQGYNKSSHPHGQVVHSDVNQVLPEGMRAAWLQKQWVESRSLQLEEQKVQLQVEMLELEKQRLKWQRFSKKKDRELEKLSLENERMKLENERIALELKRKEMGAGLN* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0717 449 Coils Coil 383 408 - -
Lja5g0717 449 MobiDBLite consensus disorder prediction 273 295 - -
Lja5g0717 449 MobiDBLite consensus disorder prediction 336 355 - -
Lja5g0717 449 PANTHER FACTOR, PUTATIVE-RELATED 1 449 - -
Lja5g0717 449 Gene3D - 121 194 - -
Lja5g0717 449 MobiDBLite consensus disorder prediction 69 115 - -
Lja5g0717 449 PANTHER F16F4.11 PROTEIN-RELATED 1 449 - -
Lja5g0717 449 MobiDBLite consensus disorder prediction 273 289 - -
Lja5g0717 449 MobiDBLite consensus disorder prediction 83 115 - -
Lja5g0717 449 Pfam Myb/SANT-like DNA-binding domain 118 245 IPR044822 -
Lja5g0717 449 MobiDBLite consensus disorder prediction 15 53 - -
Lja5g0717 449 Coils Coil 411 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0717 Lja-Chr5 6546890 6550942 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja5g0717 Myb_DNA-bind_4 1e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0717 - - gmx:100812134 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0717 5 6546890 6550942 Lja5g0717 5 6546890 6550942 ECH
Lja2g2749 2 41540109 41542392 Lja5g0717 5 6546890 6550942 PCT