Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0713 ATGGGGAGGAAGAAGCCGACAGTTCGAGACGAAGAGAATCCGCCGCAGCAGGGCGGTGGAAAATCGAAGAAGAAGGCTGTCCTCATCGACGATGATGAATACGCCATCGGAAACGAGCTCTCTGAGGAGCAGCCGCCGCCGGCAGACGAGAAGCCCGCCGCCGCGGCTGGGAAGAAGAAGGGTAAGAAAGGTAACGCTAAAGCTGCACAAGCAAATAATGATGATGATGGAGATGAAGATGATGTGCCTGAAGTTGTGTTTGGTGGGAAGAAGAAAGGGAAGTCGAAAAAGGGTGGTGGGGGTAGTGTGTTCTCTGCGTCCAGTTTTGGTTTGCTTGGTGATGGGGAGGATGAGGATGATGATGAAGAGAAATCGGAGTTGACGGGTGAGGACGAGGAGGATGAACAGGTGGTTAGTTTTGCTGGTAAGAAGAAGCCATCAAAGGGGGGTTCGAAGAAAGGTGGAGCTAGTTTGTTTACTGCTTCGGCTTTCGATGCTATTGATGATGAGAATGATGGTGGGGAGGAGCAGGAGGAGGAGGAACCGGTTGTTAGTTTTGCTGGTAAGAAGAAGCCATCAAAGGGTTCGAAGAAAGGCGGTGGTAGTTTGTTCAATGCCGCCGCTTTTGATGATGATAATGATGGTGATGTGATGGATAATTCTGTGGACGATGGGAGGGATGGGAATGATGATGTGGATGAACCAGTTATTGCTTTCACGGGGAAGAAGAAGTCCTCCAAAGGAAGCAAGAAGGGTGGTGCTTTATTTTCAGCTGCGAGTTTTGATGATGTAGATGAGGCTAAGGATGATAAGGAAGAAGATGATGATGAAGATATAGGACCAATCACTTTCTCAGGTAAGAAAAAGAAGTCATCGAAGTCTTTGAAGAAGGATTTTAGTTCACTGAGTACTGCTGTTCCTGATGAGGATAATATTTCTGTACCCGAGTCAGCTAAAGGCGGTGATGATGAGGACGAGGAAGATGTTTCTTTAGTTGCATTTTCGGGTAAAAAGAAGTCTTCCAAAAAGAAAAGCAGCAGTGCTGCTGCCAAAGTGAGTGATGGAATTGGGTTTGTGAGTGAAAGTATTGAGTTTGTTAAGCCTGAGCAACCCAGTGTTGGAATAGGTAATACTGATGCTGACAACAACTCCGTTAACAAGAGTGAAGAGGTCTCTGAAACTTCCAAGAATAAGAAGAAGAATAAGAAGAAGAGTGGAAGGACTGCTCAAGAGGAGGACGATCTAGACAAGATTCTTGCAGAACTTGGTGAGGCTCCTCCTATAGCAAAACCTGCTGTTCCTCCACCGCAGGATGATAAAGTTCAGCCTACTCCTGAAGTAGGTTCTGCTGCTGATGCTTCAGGGGAAAAGGGGGGAGGAGAGGAGACTGTAGAGTCGGCTGCGGCAAAAAAGAAGAAAAAGAAGAAGGAAAAGGAAAAGGAGAAGAAGGCAGCTGCAGCAGCAGCTGGAAGTGCACCAGCAAATGAAACTGTAGAAGTTAAAGCTGAGGTTGTTGAATCAAAGAAGAATGAGTCTAAGACTAAAGCAGCTGACAAGAAATTGCCAAAGCATGTTAGGGAGATGCAGGAAGCACTGGCTCGGAGAAAAGAAGCTGAAGAAAGGAAGAAAAGAGAAGAGGAGGAGAAGTTAAGGAAAGAAGAAGAGGAGCGACGCAGGCAAGAGGAACTTGAGAGACAGGCTGAAGAAGCTAGACGCAGAAAGAAGGAAAGGGAAAAGGAGAAACTCCTGAAAAAGAAGCAAGAGGGTAAACTGTTAACTGGTAAGCAGAAAGAAGAACAACGCCGTCTGGAGGCAATGAGGAGGCAAATTCTCAGTACTGGGGTTGCAACTCTTCCTACCGGGGACGCGGGTGCTCCAGCCAAAAAACCCATATATCAGACGAAGAAGTCAAAACCATCCAATCGTAATCAGAATGGTGCAGCTACTATTCAGACAACTGAAAGTTTTGAAGCAAAGGAGACTACCACTGATGTGGATTCTGAGGAACCAAAAAAGGTTGAAGAAGTGGAGTCAGTGCAGGTGGAGGACAAAGTTGAACTTCCTGAAGTTGTTGAAGAGGATGTAGTTGAAGATGATGATGATGTAGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTGAATGCAAGAGGCGCATTTGATGATGAAGAGGAAGACTCAGAGCCTGAACCAATTGTCAAAAAGGAGAGTAAACAAGCTTTACCTGCTACCAGTGCTGGTGCTACTAATAAAGAAATTGAAGATAAAAAGCCAGTTAGTGGTGTGGACAAAAATAGTAAGCAACCACCTAAGTCTGATGTGCCTCCTAAACTGAATGATGAGAACCTCCGCTCCCCAATTTGCTGTATCATGGGGCATGTGGACACCGGTAAGACCAAGCTGCTGGATTGTATTCGAGGTACTAATGTTCAAGAGGGTGAGGCTGGCGGTATCACACAACAGATTGGTGCAACATACTTTCCTGCTGAGAACATTCGTGATAGAACAAAAGAACTTAAAGCTGATGCCACGCTGAAAGTTCCTGGTCTACTGGTTATTGATACCCCAGGGCACGAATCGTTTACTAACTTAAGGTCTCGCGGTTCAGGGCTATGTGACATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACAATAGAATCACTCAATCTATTAAAAATGAGGAACACAGAATTCATTGTTGCCTTGAATAAGGTTGACAGACTTTATGGGTGGAAAACATGTCGCAATGCTCCAATTGGTAAAGCAATGAGGCTGCAGTCTAAGGATGTTCAAAATGAATTCAATATGAGGCTCACTCAGATTATTACTCAATTCAAGGAACAAGGGCTAAATACTGAGTTGTATTATAGAAACAAAGAAATGGGAGAAGTATTCAACATTGTGCCTACTAGTGCAATAAGTGGTGAAGGTATCCCAGATATGTTATTACTATTGGTTCAGTGGACGCAAAAAACAATGGTTGAGAAGCTTACATATAGTGATGAAGTGCAGTGTACTGTTCTGGAGGTCAAGGTTGTTGAAGGCCATGGAACTACTATTGATGTTGTCTTAGTTAATGGTGTTCTTCATGAAGGAGATCAAATTGTTGTCTGCGGAATGCAGGGGGAACCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTCCGTATTAAGGGGACATATATCCATCACAAAGAAATCAAAGCTGCGATGGGTATAAAGATCACTGCCCAGGGGCTTGAACATGCTATTGCTGGCACTAGTTTATATGTGGTGAAACCTGACGATGATTTGGAAGATATTAAAGCGGCTGCTGTGGAAGATATGAAGTCAGTAACAAACAGGACTGACAAGAGTGGTGAGGGTGTTTGTGTACAAGCATCTACCCTTGGCTCATTGGAAGCTTTACTGGAGTTTTTGAAAACTCCAGAAGTGAGTATTCCTGTTAGTACTATTAGTATAGGCCCTGTACACAAAAAGGATGTAATGAAAGCCAGCGTAATGCTTGCAAAGAAACGGGAGTATGCTGCTATATTGGCATTTGACGTCAAAGTCACTCCAGAGGCTAAGGATCTTGCAGAGGAATTGGGGGTCAAAATTTTTATTGCGGATATCATTTATCATCTGTTTGATCAGTTTAAAGAGTATATTGACAAAATTAAGGAGGAGAAAAAGATAGAATCTGCAGATGAGGCAGTCTTCCCATGTGTTTTGAAAATCTTACCGAATTGCGTTTTCAACAAGAAGGATCCCATTGTTTTGGGAGTTGATGTCCTTGAAGGCATTGCAAAGGTTGGGACTCCAATTTGTATTCCTTCCAAAGAGTTCATTGATATTGGTCGCCTTGCCTCCATTGAGAATAACCATAAACCTGTCGATTATGCGAAGAAGGGGCAGAGAGTAGCCATTAAGATTGTCGGCAGCAATTCTGAGGAGCAACAGAAGATGTTTGGGAGGCATTTTGAAATTAATGATGAACTTGTGAGCCATATTTCACGGAGATCAATTGATATACTCAAAACTAATTACCGGGATGAACTGAGTAATGAGGAATGGAGATTGCTCGTGGCATTGAAGAAACTTTTCCAGATACAATGA 4137 0.4363 MGRKKPTVRDEENPPQQGGGKSKKKAVLIDDDEYAIGNELSEEQPPPADEKPAAAAGKKKGKKGNAKAAQANNDDDGDEDDVPEVVFGGKKKGKSKKGGGGSVFSASSFGLLGDGEDEDDDEEKSELTGEDEEDEQVVSFAGKKKPSKGGSKKGGASLFTASAFDAIDDENDGGEEQEEEEPVVSFAGKKKPSKGSKKGGGSLFNAAAFDDDNDGDVMDNSVDDGRDGNDDVDEPVIAFTGKKKSSKGSKKGGALFSAASFDDVDEAKDDKEEDDDEDIGPITFSGKKKKSSKSLKKDFSSLSTAVPDEDNISVPESAKGGDDEDEEDVSLVAFSGKKKSSKKKSSSAAAKVSDGIGFVSESIEFVKPEQPSVGIGNTDADNNSVNKSEEVSETSKNKKKNKKKSGRTAQEEDDLDKILAELGEAPPIAKPAVPPPQDDKVQPTPEVGSAADASGEKGGGEETVESAAAKKKKKKKEKEKEKKAAAAAAGSAPANETVEVKAEVVESKKNESKTKAADKKLPKHVREMQEALARRKEAEERKKREEEEKLRKEEEERRRQEELERQAEEARRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRRQILSTGVATLPTGDAGAPAKKPIYQTKKSKPSNRNQNGAATIQTTESFEAKETTTDVDSEEPKKVEEVESVQVEDKVELPEVVEEDVVEDDDDVEDEWDAKSWDDVNLNARGAFDDEEEDSEPEPIVKKESKQALPATSAGATNKEIEDKKPVSGVDKNSKQPPKSDVPPKLNDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRDRTKELKADATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIGKAMRLQSKDVQNEFNMRLTQIITQFKEQGLNTELYYRNKEMGEVFNIVPTSAISGEGIPDMLLLLVQWTQKTMVEKLTYSDEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGEPIVTTIRALLTPHPMKELRIKGTYIHHKEIKAAMGIKITAQGLEHAIAGTSLYVVKPDDDLEDIKAAAVEDMKSVTNRTDKSGEGVCVQASTLGSLEALLEFLKTPEVSIPVSTISIGPVHKKDVMKASVMLAKKREYAAILAFDVKVTPEAKDLAEELGVKIFIADIIYHLFDQFKEYIDKIKEEKKIESADEAVFPCVLKILPNCVFNKKDPIVLGVDVLEGIAKVGTPICIPSKEFIDIGRLASIENNHKPVDYAKKGQRVAIKIVGSNSEEQQKMFGRHFEINDELVSHISRRSIDILKTNYRDELSNEEWRLLVALKKLFQIQ* 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0713 1378 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1111 1240 IPR036925 -
Lja5g0713 1378 MobiDBLite consensus disorder prediction 113 135 - -
Lja5g0713 1378 MobiDBLite consensus disorder prediction 375 390 - -
Lja5g0713 1378 MobiDBLite consensus disorder prediction 1 353 - -
Lja5g0713 1378 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 785 1001 IPR000795 GO:0003924|GO:0005525
Lja5g0713 1378 Gene3D Translation factors 1241 1378 - -
Lja5g0713 1378 CDD IF2_eIF5B 788 998 - -
Lja5g0713 1378 CDD aeIF5B_II 1009 1120 - -
Lja5g0713 1378 MobiDBLite consensus disorder prediction 367 782 - -
Lja5g0713 1378 Coils Coil 461 489 - -
Lja5g0713 1378 MobiDBLite consensus disorder prediction 405 420 - -
Lja5g0713 1378 Coils Coil 521 587 - -
Lja5g0713 1378 Gene3D - 779 1007 IPR027417 -
Lja5g0713 1378 Gene3D Translation factors 1008 1129 - -
Lja5g0713 1378 TIGRFAM small_GTP: small GTP-binding protein domain 790 914 IPR005225 GO:0005525
Lja5g0713 1378 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1378 - -
Lja5g0713 1378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 779 1077 IPR027417 -
Lja5g0713 1378 MobiDBLite consensus disorder prediction 687 708 - -
Lja5g0713 1378 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1378 IPR015760 -
Lja5g0713 1378 Pfam Elongation factor Tu GTP binding domain 789 997 IPR000795 GO:0003924|GO:0005525
Lja5g0713 1378 CDD IF2_aeIF5B_IV 1249 1344 - -
Lja5g0713 1378 Pfam Elongation factor Tu domain 2 1024 1103 IPR004161 GO:0005525
Lja5g0713 1378 Gene3D - 1130 1234 IPR036925 -
Lja5g0713 1378 Pfam Translation-initiation factor 2 1115 1227 IPR023115 -
Lja5g0713 1378 MobiDBLite consensus disorder prediction 659 686 - -
Lja5g0713 1378 MobiDBLite consensus disorder prediction 501 606 - -
Lja5g0713 1378 MobiDBLite consensus disorder prediction 634 658 - -
Lja5g0713 1378 SUPERFAMILY Translation proteins 1245 1377 IPR009000 -
Lja5g0713 1378 MobiDBLite consensus disorder prediction 219 240 - -
Lja5g0713 1378 PRINTS GTP-binding elongation factor signature 789 802 IPR000795 GO:0003924|GO:0005525
Lja5g0713 1378 PRINTS GTP-binding elongation factor signature 853 863 IPR000795 GO:0003924|GO:0005525
Lja5g0713 1378 PRINTS GTP-binding elongation factor signature 869 880 IPR000795 GO:0003924|GO:0005525
Lja5g0713 1378 PRINTS GTP-binding elongation factor signature 905 914 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0713 Lja-Chr5 6508608 6519112 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0713 233 1378 Eukaryotic Initiation Factors Gene Family AT1G76810 63.835 0.0 1169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0713 K03243 - gmx:100814875 1598.18