Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0709 ATGGCTCGCGGTCGGAAGAAGCAGCAGCAACAAACACAAGCTTTGGCTGACAATGGAGGCACCAAAACGACCAATGTTGTTGGTGGGGTACGAGGAGGAAGAGGGTCTTCTTCTGCTTCTGCTTTTGCTTCAATTCAAGTTGCTGTGAGAAAGAAGCGTGGCCGAAAGAGTAATGCGGAAAAGGAAGCAAATGGTGGGGGTGTTATGGAGCAGAAACGTAGTAGTAGAGCAAAACGGAAGACCCTTTTGATAGATGATGAAGAAGGAGAAGAAAATGGTAGGGGACTCAAGAAACGAGGTCGTAAGAGACAGAGAATGACAGAAACTTTTGTAGAGGGGTCAAGTGGAAATCAGAGAGGTTCAAGGGAGCGTAGAGCTTCAGTTAGCGAGGGAAAGACAGAAACTTCTGCTTTCGGGGTTCAGGATAAGAGAGATCCTAAGGAGTCCTTAATGTGCCATCAATGTCAGAGAAATGATAAAGGCCCGGTTGTAAGATGCACGAATTGTAAACGGAAAAGATTTTGCTTAGTCTGTTTGAAACACTGGTATCCTCACTTGAAAGAGGATGATATTGCTAAGGCATGTCCTGTGTGCTGTGGTAATTGCAATTGCAAAGCATGCTTGCAATCTGGTGATCTTCTTAAAAGACTGAAGGTAAAAAGAAATACTGATGAAGGCAAGGAGGTTGAGCTCTATAAGTATTTGCTGAAGCATCTTCTTCCGTATTTAAGACAGTTGGATGAAGAACAAATGATGGAGAAGGAGATAGAAGCTAAGAGACAAGGGCTCTCACTCTCGGAGCTAAAAATAAAAGAGGCAGATCACTATGAAGGAGATCGTGTGTATTGTGAAAACTGTAAAACGTCAATATTTGGTTATCACAGAAGCTGTGCGAAATGCTCTTTTGACCTTTGTCTTATCTGCTGCCGTGAGCTTCGTAGTGGGCGGCTTCTTGGTGGTGCAGATCCAGTTGAGTTGAAGTTTGTCTCCCGAGGTCGTGGTTATTTGCATGGTGCAAGAGAAGATAACAGCATAGTAAAAAATACATCACATGCAAATGCTGATGCTGAGATTCGTCAATGGTCAATGTCTGGGTGGCGTGCTGATAGTGATGGTAACATTCCATGTCCAAAAGTCAATAATGAGAGTAGCCATGGTTTTCTTGAACTGAGAAGCATATGTACTCCGGATTTCATCTCTGAGTTACTATCTAAAGCTGAAAAACTAGCAGAAGCATATAAGCTTGAAGATGCTGTTGAGACTCTGAATAATTGCTGTTCTTGTTTGAAGCCTGATAGAAATACCAACGATGATAGATATATTAATATGAGGAAGGCAGCTTCTCGTGAAGATTCCAGTGACAACTATTTATACTCTCCCAGGGCTGTAGATCTAGGGCACGATGATTTAAGACATTTTCAATGGCATTGGAGCAAAGGCGAGCCTGCAATAGTAAGCAATGTTCTTGAATGCACGTCAGGTTTAAGCTGGGAACCTCTTGTCATGTGGCGCGCATTACGTCAAGTGTCCAAGCATGATAAACATTTGGATGTGGAGGCTATTGATTGTTTAGATTGGTGTGAGGAACCGATCAATATCCACCACTTCTTTACTGGGTATACGGAGGATCGTGAGGATTGGTGTGGTTGGCCTAAAATATTGAAATTAAAAGATTGGCCCCCTTCTAATTTATTTGAGGAACGTTTACCTCGTCATTGTGCAGAATTCATATCATCCTTGCCCTTTAAACAATATACATGTCCGTACAAAGGTTCTCTTAACCTTGCTGTGAAGTTGCCTTGGGGCTGTCTAAAGCCAGACATGGGTCCAAAATCATATATTGCTTATGGATTTGCTCAAGAGCTTGGGCGTGGTGATTCTGTGACTAAGCTTCATTGTGATATGTCTGATGCTGTGTATGTGTTGTGTCACACTGCTGAAGTGAAATGGAAACCTAAGACAATTACTGCTATTGCAAATTTGATGCCACGCCACCTTGAGCAAGACAAAAGGGAGCAGCTACTTGGAGATAGTCAGGATGGAGAAAGTAATGTTGACAAGCCTGATAGTTCATCTTCTACCAAAAATTCCTTGGACAAGCAAATTAGTGTTCAGGTCATGGAAAATGGAAGTGGACTGTGTGATGTGAAAGTGAGTGGTCATTCTTATCCACACCCTAGTATTAATGAAGGTTATCTTTCATGTGGGTCAGAACTCAAAGAGGTTGGGAAAGTGACAATGAAAGAAGAAAATGGTATATTGATTGAGGGGGATGCTTTAGAAGGTGCTCTTTGGGATATATTTAGGAGAAAGGATGTACCTAAGTTGCAGGAGTATCTAAAAAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCAGTCCTTTAATGAAGGTTATTCATCCCATCCATGATCAGGTCTTTTATCTGACTGTGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTGTCCAGAAGCTAGGAGATTCTGTTTTTATTCCAGCTGGTTGTCCTTACCAAGTCAGAAATCTGAAGTCATGCATCAGCGTTGCACTTGATTTTGTCTCTCCTGAGAGTGTTGGTGAGTGCTTCCGTTTGACTGAAGAGTTCCGCAGGCTTCCGGTAAATCACGGGTCAGTCGAGGACAAATACGAGGTGAAGAAAATGACTGTGCATGCTGTGGTTGATGTGGTCAAAAACTTGGAGAATGCAAGGTCTAGAGAAACCAAGGTTCCATCTTAA 2757 0.4251 MARGRKKQQQQTQALADNGGTKTTNVVGGVRGGRGSSSASAFASIQVAVRKKRGRKSNAEKEANGGGVMEQKRSSRAKRKTLLIDDEEGEENGRGLKKRGRKRQRMTETFVEGSSGNQRGSRERRASVSEGKTETSAFGVQDKRDPKESLMCHQCQRNDKGPVVRCTNCKRKRFCLVCLKHWYPHLKEDDIAKACPVCCGNCNCKACLQSGDLLKRLKVKRNTDEGKEVELYKYLLKHLLPYLRQLDEEQMMEKEIEAKRQGLSLSELKIKEADHYEGDRVYCENCKTSIFGYHRSCAKCSFDLCLICCRELRSGRLLGGADPVELKFVSRGRGYLHGAREDNSIVKNTSHANADAEIRQWSMSGWRADSDGNIPCPKVNNESSHGFLELRSICTPDFISELLSKAEKLAEAYKLEDAVETLNNCCSCLKPDRNTNDDRYINMRKAASREDSSDNYLYSPRAVDLGHDDLRHFQWHWSKGEPAIVSNVLECTSGLSWEPLVMWRALRQVSKHDKHLDVEAIDCLDWCEEPINIHHFFTGYTEDREDWCGWPKILKLKDWPPSNLFEERLPRHCAEFISSLPFKQYTCPYKGSLNLAVKLPWGCLKPDMGPKSYIAYGFAQELGRGDSVTKLHCDMSDAVYVLCHTAEVKWKPKTITAIANLMPRHLEQDKREQLLGDSQDGESNVDKPDSSSSTKNSLDKQISVQVMENGSGLCDVKVSGHSYPHPSINEGYLSCGSELKEVGKVTMKEENGILIEGDALEGALWDIFRRKDVPKLQEYLKKHFREFRHVHCSPLMKVIHPIHDQVFYLTVEHKRKLKEEYGIEPWTFVQKLGDSVFIPAGCPYQVRNLKSCISVALDFVSPESVGECFRLTEEFRRLPVNHGSVEDKYEVKKMTVHAVVDVVKNLENARSRETKVPS* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0709 918 MobiDBLite consensus disorder prediction 1 25 - -
Lja5g0709 918 ProSiteProfiles JmjC domain profile. 588 876 IPR003347 -
Lja5g0709 918 MobiDBLite consensus disorder prediction 685 699 - -
Lja5g0709 918 MobiDBLite consensus disorder prediction 1 139 - -
Lja5g0709 918 Pfam JmjC domain, hydroxylase 758 859 IPR003347 -
Lja5g0709 918 SUPERFAMILY Clavaminate synthase-like 469 889 - -
Lja5g0709 918 Gene3D Cupin 462 884 - -
Lja5g0709 918 CDD cupin_RmlC-like 800 860 - -
Lja5g0709 918 ProSiteProfiles Zinc finger RING-type profile. 152 198 IPR001841 -
Lja5g0709 918 SMART cupin_9 569 876 IPR003347 -
Lja5g0709 918 MobiDBLite consensus disorder prediction 72 97 - -
Lja5g0709 918 MobiDBLite consensus disorder prediction 675 699 - -
Lja5g0709 918 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 908 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0709 Lja-Chr5 6441676 6449816 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja5g0709 JmjC 5.9e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0709 K15601 - gmx:100805723 1140.95