Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0708 ATGGAGAATACAACAGAGAAGAACGTGACAATATCTTTAAACATTCCACAAGTTCGTGACAGTAATGAGTCTCCTAGGGTGGTCAGCAATGCTAAGCCCTTTGGAGAAGAAGAGAAGCGTAAAGAAATTCCAGAGAATAATGGGCATATGATGAGCCTTCCCATCAACAGCACTGGAGAGACGCAAGCGAATTTGGCTCAAGTAATTGCCCATTATGTTGGGACCCTAAATAAAAAACAATTGCGCTTTTTAGGTTATTCCACTAATCAAGAATTTGACTATGACGCATTAGCACCATTATTGCATTTTCACATAAACAATGCTGGCGACCCATTTATAGGGAGTAGTTATAGTCTAAATTCAGTGGAATTTGAAGTACCCGTGCTTGATTGGTTTGCCAATCTGTGGGAGATAGAGAAAGAGGAGTATTGGGGATACGTCACAACTGGTGGAACAGAGGGAAACCTTTATGGGATATTATCTGGGAGGGAACAATTCCCAAATGGAATTTTGTACACATCACAGGACTCGCATTATTCAATATTCAAGACTGTAAAAATGTATAGAATGCAATGCATAAAAGTTGGCACTTTGATCTCTGGTGAAATCAATTATGTTGATCTAAAAGCTTTACTTCTTGCTCATAAGAACAGGCCAGCCATCATCAATCTAAATATAGGAACTACTATGAAAGGAGCAATTGATGACATTGATCATGTAATACAAACACTTGAGGAAAGTGGCTTCTCTCGCGATCAATTCTATATTCATTGTGATGGAGCTTTATCCGGAATAATGTTGCCATTTCTTAAACAAGCTCCAAAGGTTACCTTCAAGAAGCCCATTGGAAGTATATCCACTTCTGGCCATAAGTTTTTAGGATGCCCAATTCCTTGTGGTGTTGTCATAACACGCCTAGAACATGTCAATGCTCTTTGTAGAGATGTTGAATACATTAAATCAAGGGATGTCACAATCACGGGTAGCCGTTGTGGGCTTACCCCTATTTTCCTCTGGTATGCACTCCAAGAAAAAGGTTTAATAGGACTTAAGAAAGAAGCACAAAAGTGCATCACAAATGCAAACCACTTACTCGATAAACTACATGAAAATGGAATTGGTGCAATGCAAAACAAGTTCAGTAATACCGTTGTATTTGAAAGGCCTCTAAATGACGACTTTGTGCAAAGGTGGAGTTTGTCTTGTGAAGGAAATATTGCACATGTGGTTGTGATGCAGCATGTCACTATTGAAATGCTAGACTCCTTTGTTAGTGAACTTGTTAAAAAACGATCTATTTGGTTTCAAGGTGGACTGATAAAGCCTCCATGCATCTCAAATGCCATTGGTAGAGAAAATTGTGCCTGTGCATTGCATAAATCGTTGTAA 1389 0.3895 MENTTEKNVTISLNIPQVRDSNESPRVVSNAKPFGEEEKRKEIPENNGHMMSLPINSTGETQANLAQVIAHYVGTLNKKQLRFLGYSTNQEFDYDALAPLLHFHINNAGDPFIGSSYSLNSVEFEVPVLDWFANLWEIEKEEYWGYVTTGGTEGNLYGILSGREQFPNGILYTSQDSHYSIFKTVKMYRMQCIKVGTLISGEINYVDLKALLLAHKNRPAIINLNIGTTMKGAIDDIDHVIQTLEESGFSRDQFYIHCDGALSGIMLPFLKQAPKVTFKKPIGSISTSGHKFLGCPIPCGVVITRLEHVNALCRDVEYIKSRDVTITGSRCGLTPIFLWYALQEKGLIGLKKEAQKCITNANHLLDKLHENGIGAMQNKFSNTVVFERPLNDDFVQRWSLSCEGNIAHVVVMQHVTIEMLDSFVSELVKKRSIWFQGGLIKPPCISNAIGRENCACALHKSL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0708 462 MobiDBLite consensus disorder prediction 20 42 - -
Lja5g0708 462 Gene3D - 102 342 IPR015421 GO:0003824
Lja5g0708 462 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 284 305 IPR021115 GO:0016831
Lja5g0708 462 SUPERFAMILY PLP-dependent transferases 73 429 IPR015424 -
Lja5g0708 462 PANTHER - 34 459 - -
Lja5g0708 462 Gene3D Aspartate Aminotransferase, domain 1 343 431 IPR015422 GO:0003824
Lja5g0708 462 PANTHER SERINE DECARBOXYLASE 34 459 - -
Lja5g0708 462 Pfam Pyridoxal-dependent decarboxylase conserved domain 97 373 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0708 Lja-Chr5 6438297 6440612 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0708 226 360 Calmodulin-binding Proteins AT1G65960 27.517 3.48e-06 47.0