Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0706 ATGGAGAATTCAACAGAGAAGAACGTGACAATATCTTTAAACATTCCACAAGTTCGTGACAGTAATGAGTCTCCTAGGGTGGTCAGCAATGCTAAGCCCTTTGGAGAAGAAGAGAAGCATAAAGAAATTCCAGAGAATAATGGGCATATGATCTGTCTTCCCATCAACAGCACTGGAGAGACGCAAGCGAATTTGGCTCAAGTAATTGCCCATTATGTTGGGACCCTAAATAAAAAACAATTGCGCTTTTTAGGTTATTCCACTAATCAAGAATTTGACTATGACGCATTAGCACCATTATTGCATTTTCACATAAACAATGCTGGCGACCCATTTATAGGGAGTAGTTATAGTCTAAATTCAGTGGAATTTGAAGTACCCGTGCTTGATTGGTTTGCCAATCTGTGGGAGATAGAGAAAGAGGAGTATTGGGGATACGTCACAACTGGTGGAACAGAGGGAAACCTTTATGGGATATTATCTGGGAGGGAACAATTCCCAAATGGAATTTTGTACACATCGCAAGACTCGCATTATTCAATATTCAAGACTGCAAAAATGTATAGAATGCAATGCATAAAAGTTGGCACTTTGATCTCCGCTTTACTTCTTGCTCATAAGAACAGGCCAGCCATCATCAATCTAAATATAGGAACTACTATGAAAGGAGCAATTGATGACATTGATCATGTAATACAAACACTTGAGGAAAGTGGCTTCTCTCGCGATCAATTCTATATTCATTGTGATGGAGCTTTATCCGGAATAATGTTGCCATTTCTTAAACAAGCTCCAAGGATTAACTTCAAGAAGCCCATTGGAAGTATATCCACTTCTGGCCATAAATTTTTAGGATGCCCAATTCCTTGTGGTGTTGTCATAACACGCCTAGAACATGTCAATGCTCTTTGTAGAGATGTTGAATACATTAAATCAAGGGATGTCACAATCACAGGTAGCCGGTGTGGGCTTACCCCAATTTTCCTCTGGTATGCACTCCAAGAAAAAGGTTTAATAGGACTTAAGAGAGAAGCACAAAAGTGCATCACAAATACAAACCACTTACTCGGTAAACTACATGAAAATGGAATTGGTGCAATGCAAAACAAGTTCAGTAATACCATTGTATTTGAAAGGCCTCTAAATGATGACTTTGTGCAAAGGTGGAGTTTGTCTTGTGAAGGAAATATTGCACATGTGGTTGTGATGCAGCATATCACTATTGAAATGCTAGACTCCTTTGTTAGTGAACTTGTTAAAAAACGATCTATTTGGTTTCAAGGTGGACTGATAAAGCCTCCATGCATCTCAAATGCCATTGGTAGGGAAAATTGTGCCTCTGCATTGCACAATTCGTTGTAA 1362 0.3906 MENSTEKNVTISLNIPQVRDSNESPRVVSNAKPFGEEEKHKEIPENNGHMICLPINSTGETQANLAQVIAHYVGTLNKKQLRFLGYSTNQEFDYDALAPLLHFHINNAGDPFIGSSYSLNSVEFEVPVLDWFANLWEIEKEEYWGYVTTGGTEGNLYGILSGREQFPNGILYTSQDSHYSIFKTAKMYRMQCIKVGTLISALLLAHKNRPAIINLNIGTTMKGAIDDIDHVIQTLEESGFSRDQFYIHCDGALSGIMLPFLKQAPRINFKKPIGSISTSGHKFLGCPIPCGVVITRLEHVNALCRDVEYIKSRDVTITGSRCGLTPIFLWYALQEKGLIGLKREAQKCITNTNHLLGKLHENGIGAMQNKFSNTIVFERPLNDDFVQRWSLSCEGNIAHVVVMQHITIEMLDSFVSELVKKRSIWFQGGLIKPPCISNAIGRENCASALHNSL* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0706 453 SUPERFAMILY PLP-dependent transferases 76 420 IPR015424 -
Lja5g0706 453 Gene3D - 102 333 IPR015421 GO:0003824
Lja5g0706 453 PANTHER - 35 450 - -
Lja5g0706 453 Gene3D Aspartate Aminotransferase, domain 1 334 422 IPR015422 GO:0003824
Lja5g0706 453 MobiDBLite consensus disorder prediction 20 40 - -
Lja5g0706 453 Pfam Pyridoxal-dependent decarboxylase conserved domain 97 363 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lja5g0706 453 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 275 296 IPR021115 GO:0016831
Lja5g0706 453 PANTHER SERINE DECARBOXYLASE 35 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0706 Lja-Chr5 6411677 6413899 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0706 217 351 Calmodulin-binding Proteins AT1G65960 27.517 2.71e-06 47.4