Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0704 ATGAAGGACGTGATTCTTGAATCGCTTTTCCAAGCAGCATCCAAAGAGTATTTACTTAATGCGGTCCCAAAGGTTGACAAGCCCTCTAGAGATCAAGAAGAGAAGAATGAGGAGATCCAGGAGAATAATGAACAAATGAACAACCTTGACATCACCAATTTTTTTGGGGAGACACGTGTTAATTTATCTAAAATTATTGCCAAATATGTGGTGATGCTGAATCAAAACAAACAGCGTTGCTTAGGTTTCCCTGTTAATCTGGAATTTGACTACGATGCGTTGACACCATTGTTGCATTACCACTTGAATAATGCCGGTGATCCATTTTTAGGGAGCGGTTATGCTCAAAATTCAGCAAAATTTGAAGTTTGTGTGCTTGATTGGTTTGCCAAATTGTGGGAGATAGAGAAGAATGACTATTGGGGATATGTTACAACAGGTGGAACCGAAGGAAATTTACATGGGATTTTAATGGGGAGAGAAAAATTTCAAGATGGGATTTTATATACCTCACAGAACTCGCATTATTCATTATTCAAAATTGCAATGATGTATAGAATGCGATGTGTAAAAGTTAACACATTGGTGTCTGGTGAGATGGATTGTGCTGATCTAAAGGCTTTACTCCTATCTAATAAAGACAAACCTGCAATCATCAACCTAAATATAGGAACAACTATGAAAGGGGCAATTGATGACATAGATCTCGTAATACAAACACTTGAGGAAAGTGGTTTTTCTCGTGATCGATTCTATATTCATTGTGATGGAGCTCTATCCGGAATAATGTTGCCTTTTCTTAAACAGGCTCTAAAAATTAACTTCAAGAAGCCCATTGGAAGTATATCCATTTCTGGCCATAAGTTTTTAGGATGTCCCATTCCATGTGGAGTTGCAATAACACGCTTAGAACATGTTAATGCTTTATCTAGAGATGTTGAATACATTGAATCAAGGGATGTCACAATCACAGGTAGCCGTTGTGGGCTTGCCGCAATCTTCCTTTGGTATGCACTCCAAGAAAGAGGTTTACTTGGACTTAAGAGAGAAGCTCGAATGTGCATCGCCAATGCACGTCACTTACTGAATAAACTACATGATAATGGTATTGGTGCAATGCGGAATGAGTTTAGCATCACAGTTGTGTTTGAAAGGCCTCCAGATGATGACTTTGTGCGAAAGTGGAGTTTGTCTTGTGAAGGAGATGTTGCACATGTGGTTGTGATGAAGCATGTTACTATTGAAATGATAGACTCTTTTGTTGGTGAGCTTGTGAAAAAAAGATCCATATGGTTTCAAGGTGGACAAATAAAACCCCCATGCATTGCAAACACTGTTGGTAGAGAAAATTGTGCTTGTGCATTGCATAACTCTTTCTAA 1380 0.3848 MKDVILESLFQAASKEYLLNAVPKVDKPSRDQEEKNEEIQENNEQMNNLDITNFFGETRVNLSKIIAKYVVMLNQNKQRCLGFPVNLEFDYDALTPLLHYHLNNAGDPFLGSGYAQNSAKFEVCVLDWFAKLWEIEKNDYWGYVTTGGTEGNLHGILMGREKFQDGILYTSQNSHYSLFKIAMMYRMRCVKVNTLVSGEMDCADLKALLLSNKDKPAIINLNIGTTMKGAIDDIDLVIQTLEESGFSRDRFYIHCDGALSGIMLPFLKQALKINFKKPIGSISISGHKFLGCPIPCGVAITRLEHVNALSRDVEYIESRDVTITGSRCGLAAIFLWYALQERGLLGLKREARMCIANARHLLNKLHDNGIGAMRNEFSITVVFERPPDDDFVRKWSLSCEGDVAHVVVMKHVTIEMIDSFVGELVKKRSIWFQGGQIKPPCIANTVGRENCACALHNSF* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0704 459 MobiDBLite consensus disorder prediction 26 41 - -
Lja5g0704 459 SUPERFAMILY PLP-dependent transferases 76 426 IPR015424 -
Lja5g0704 459 PANTHER - 28 457 - -
Lja5g0704 459 Coils Coil 29 52 - -
Lja5g0704 459 Pfam Pyridoxal-dependent decarboxylase conserved domain 119 380 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lja5g0704 459 Gene3D - 99 339 IPR015421 GO:0003824
Lja5g0704 459 MobiDBLite consensus disorder prediction 24 43 - -
Lja5g0704 459 Gene3D Aspartate Aminotransferase, domain 1 340 428 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0704 Lja-Chr5 6385739 6388367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0704 223 369 Calmodulin-binding Proteins AT3G17760 27.329 7.34e-08 52.8