Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0701 ATGGATTTTGCTGAAGGCATCGGAGAGAGCAACTCGCCTCCACGCGCCGCCTTCGCCGGCTACACCAACTCCGATGTCAAGAACGACGTCTTCAACCGCTTGCTCCAAACCGGTCACGACCAAGCCGTCTCCAATCCCGAGTTTCGTCAACAGTTGGAAGCTCACTTCAATCGCTTGCCTCCAAGTTATGGACTTGATGTGAATATTGATAAAGCTGAAGATGTGTTGTTGCATCAGAACCTTCTTGCTCAGGCAAGAGACCCGGACAAACGCCCTGTCTACCATATACGCTTCTTGGAGAATATTTCTACTAGATCAGATGATGAGGATCAACAAATTGTAAATAGTCATCCTAGCTCTTCCAATTCAATAAATGGTGGAGCTGCGTCATCTCATCAGAGGGATCTTGCAACTGAGTTTGAGCCTTGCTCGAAGCTTGAGGACCTAAATTTGGATGTCATAAAGAACTCCAAGGAGACAGAGGAAAAATTTCTTACCGACAACTTTTCCCAGAGCCATGAACATTCAAGTGTCCCAGTTCACGAAATAATATTTTCCTCTGTTGACAGGCCTAAGCTTTTAAGCCAGCTGTCTGCATTGCTGTCTGATATTGGGCTCAACATCCGTGAAGCACATGTATTTTGCACAACTGATGGCTACTCCCTTGATGTTTTTGTGGTAGATGGATGGCCAGTAGAGGAAACAGGTGGTTTGTATGATGCTATGGAAAAGGCTGTAGCAAGAAGTGAGGGATCATGGTCTCGTTATTCAGATTCTCATTCAGCTGTTGAGAAAGCCTCAGCTTCAGAAGGAAAATCTGGAGATTGGGAAATAGACAGGAGATTGCTAAAGATAGGAGAAAGAATAGCATCTGGATCCTATGGGGATTTGTATCGTGGAGTTTATCTAGGTGAAGAGGTTGCTGTTAAGGTTCTGAGAAATGAGCAACTGAATGATTCCTTAGAGGATGAGTTTGCTCAAGAAGTGGCAATTCTGAGGCAGGTGCATCATGAAAATGTTGTTCGTTTCATTGGGGCATGCACAAAGTGTCCACATTTGTGCATAGTAACAGAGTATATGCCTGGTGGAAGTCTGTATGATTACTTGCACAAAAATCATAATGTTTTGGAGCTGTCTCAATTACTCAAGTTTGCACTTGATGTCTGCAAGGGTATGGAGTATTTGCATGCAAACAACATAATTCACAGGGATCTGAAGACAGCCAATTTGCTGATGGATACACACAGTGTTGTTAAAGTGGCAGATTTTGGAGTTGCTCGATTCCTAACTCAGGGGGGAGTGATGACAGCCGAAACTGGAACTTATAGGTGGATGGCACCAGAGTATCTTACTGCTATTGGATTTTCTCACAAGGTTATAAACCATCAGCCCTATGATCAGAAAGCAGATGTTTTCAGTTTTTCCATAGTACTGTGGGAACTAGTGACAGCAAAGGTGCCATATGATACCATGACTCCTCTACAAGCTGCATTGGGTGTGAGACAGGGACTGCGACCTGAACTTCCAAAGCATGGGCACCCTAAACTATTAGATTTGATGCAAAGATGTTGGGAAGGAATTCCAAGCGACCGGCCATCCTTTAATGAGATCAGAGTTGAGCTTGAAAGTCTTTTGCAAACAGAGGTAAATTATATCAATTGTTACACGTAG 1671 0.4375 MDFAEGIGESNSPPRAAFAGYTNSDVKNDVFNRLLQTGHDQAVSNPEFRQQLEAHFNRLPPSYGLDVNIDKAEDVLLHQNLLAQARDPDKRPVYHIRFLENISTRSDDEDQQIVNSHPSSSNSINGGAASSHQRDLATEFEPCSKLEDLNLDVIKNSKETEEKFLTDNFSQSHEHSSVPVHEIIFSSVDRPKLLSQLSALLSDIGLNIREAHVFCTTDGYSLDVFVVDGWPVEETGGLYDAMEKAVARSEGSWSRYSDSHSAVEKASASEGKSGDWEIDRRLLKIGERIASGSYGDLYRGVYLGEEVAVKVLRNEQLNDSLEDEFAQEVAILRQVHHENVVRFIGACTKCPHLCIVTEYMPGGSLYDYLHKNHNVLELSQLLKFALDVCKGMEYLHANNIIHRDLKTANLLMDTHSVVKVADFGVARFLTQGGVMTAETGTYRWMAPEYLTAIGFSHKVINHQPYDQKADVFSFSIVLWELVTAKVPYDTMTPLQAALGVRQGLRPELPKHGHPKLLDLMQRCWEGIPSDRPSFNEIRVELESLLQTEVNYINCYT* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0701 556 SMART serkin_6 283 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0701 556 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 11 547 - -
Lja5g0701 556 SUPERFAMILY ACT-like 181 248 IPR045865 -
Lja5g0701 556 ProSiteProfiles Protein kinase domain profile. 283 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0701 556 Gene3D Phosphorylase Kinase; domain 1 272 360 - -
Lja5g0701 556 Pfam Protein tyrosine and serine/threonine kinase 283 540 IPR001245 GO:0004672|GO:0006468
Lja5g0701 556 ProSiteProfiles ACT domain profile. 182 254 IPR002912 -
Lja5g0701 556 MobiDBLite consensus disorder prediction 113 132 - -
Lja5g0701 556 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 11 547 - -
Lja5g0701 556 MobiDBLite consensus disorder prediction 107 136 - -
Lja5g0701 556 CDD STKc_MAP3K-like 289 537 - -
Lja5g0701 556 SUPERFAMILY Protein kinase-like (PK-like) 275 547 IPR011009 -
Lja5g0701 556 PRINTS Tyrosine kinase catalytic domain signature 357 370 IPR001245 GO:0004672|GO:0006468
Lja5g0701 556 PRINTS Tyrosine kinase catalytic domain signature 512 534 IPR001245 GO:0004672|GO:0006468
Lja5g0701 556 PRINTS Tyrosine kinase catalytic domain signature 394 412 IPR001245 GO:0004672|GO:0006468
Lja5g0701 556 PRINTS Tyrosine kinase catalytic domain signature 469 491 IPR001245 GO:0004672|GO:0006468
Lja5g0701 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Lja5g0701 556 Gene3D Transferase(Phosphotransferase) domain 1 361 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0701 Lja-Chr5 6322807 6333510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0701 25 552 MAP Kinase Kinase Kinase AT2G17700 49.446 1.26e-173 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja5g0701 PK_Tyr_Ser-Thr 2.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0701 - - lja:Lj5g3v1955080.2 976.852