Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0697 ATGGCAGATCTTGTTAGCCACAGGAATGCCGACCGTGACATCGACCAGGCATTGATTGCTTTGAAAAAGGGTGCTCAACTGCTTAAATATGGTCGTAAGGGAAAGCCTAAGTTTTGCCCATTTAGACTTTCCAGTGATGAATTGTCTTTAATCTGGATTTCAAGTAGTGGAGAAAAAAGTCTGAAGCTATCTTCGATCTCAAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGATATCTGCGTCCTGAGAAGGACTATTTGTCCTTTTCACTTATTTATAACCACGGGAAGCGATCCCTTGATTTGATTTGCAAGGATAAGGTTCAGGCAGAATTGTGGATTACTGGTCTCAAGGCACTGATTTCTTCTGGTCAAGGTGGGCGTTCCAAAATAGATGGATGGAGTGATGGAGGCCTATGTCTTGATGATAGTAAAGACTTGACATCGAGTAGTCCTAGTGAAAGTTCGGTTAGTGCTTCACATACACAGGACACCAGTTCTCCTGATATTTCTGTTAGTGTGCCGAATACTTCTCCAAAGTCATTTCAACCTGAGAATACCTTAAATATTGAGAGGTCACATGCACCATCAAACCCGTCAAATATGCAAGTGAAAGGATCCAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCCAGCCATGGGTCTGCACCAGATGATTACGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAGTGTTGTGAAAGTCGGTGCTGATAAAAATGGCAGTTATTTAAGCCCAAGGGCAGATATTCTCCTCCCCAAGCCATTGGAGTCCAATGTGGTTTTAGATGTACTTCAAATAGCATGCGGTGTTAAACATGCTGCTCTAGTTTCAAGGCAAGGTGAAATGTTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGGCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCACTGGCTTCTACAACTGTTGACTTTGTTGCCTGTGGGGAGTTCCATACATGTGCTGTTACAATGGCTGGGGAACTCTTTACATGGGGTGATGGTACTCATAAAGCTGGACTTCTTGGTCATGGAACTGATGTTAGTCATTGGATACCAAAGAGAATTGCTGGTCCATTAGAGGGGCTTCAAGTTGCTTTAGTCACTTGTGGTCCATGGCACACAGCTTTGATAACTTCAACCGGGCAGCTCTTCACATTCGGTGATGGAACATTTGGTGTCCTAGGCCACGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTAGAATCCTTGTCTGGTTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTAGTAGAAGTTATTGTGACACAATCCAGTGCAAGTGTATCGTCAGGTAAATTATTTACTTGGGGTGATGGGGATAAGAGTCGTCTTGGACATGGAGACAAGGAGGCCCGGCTTGAACCAACTTGTGTACCTTCACTAATTGATCACAATTTTTATAGAATTGCTTGCGGGCACAGTTTGACGGCAGGCCTGACCACGCCTGGACAAGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGCTACCTTGTTTGGTTCAAGACAAGCTTGCTGGAGAACCCGTTGAAGAAATTGCATGCGGGGCTTATCATGTAGTTGTTTTAACATCCAAAAATGAAGTTTATACTTGGGGAAAGGGTGCAAATGGGAGATTAGGTCATGGAGACGTTGAAGATAGAAAAGCACCCACTTTGGTTGAAGCCTTGAAAGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTTTCTGGTGCTGAGCAGTCTCAGTGCGCTGCTTGTAGACAGGCATTTGGATTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTTGTGCACTGCCATTCATGCAGTTCAAGGAAAGCATTAAGAGCTGCCCTGGCTCCTAATCCTGGGAAGCCATACCGTGTTTGCGATTCTTGTCATGCGAAGTTGAACAAGGTTATAGATTCTGGCAATAATAATAGGAGGAATGCTATGCCTCGTTTGTCAGGTGAAAACAAGGACAGATTAGAAAAGTCTGATCTGAGATTGACTAAATCAGCAGTGCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAGGGGAAGAAGGCCGATACATTCTCTCTGGTTCGTGCCTCTCAAGCACCGTCTTTGCTACAGCTCAAAGATGTTGTCTTGTCTACTGCTGTTGATCTGAAACGCACAGTTCCTAGACCTGTTCTTACACCATCTGGAGCAAGTTCCAGGTCTGTCGTGAGTTCCAGGTCTGTCTCCCCTTTCTCTAGAAGATCGAGCCCCCCTCGTTCAGCTACACCTATTCCAACAACATCAGGACTTTCCTTCTCAAAAAATATTTCTGATAGTCTGAAGAAGACAAATGAACTATTGAATCAAGAAGTGCTAAAGTTACGCGCTCAGGTTGAGACACTGAGACAGAGATGTGAACTGCAAGAATTAGAGGTTCAAAGGTCAGCAAAAAAGACTCAGGAAGCTATGTCACTGGCTGCTGAGGAATCTGCCAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCTCCTGGTATTTATGATGCTGAAAACATCAGACCTGCTTACGTGCCGAATGGTCTGGAGCCAAACGGCATCCACCATCCAGACTTAAATGGGGAGCACCACACCAGAGCAGAGTCAATCAGTGGCTCTAGTTTAGCTTCTGTAGGACTTGAATACTCTCTGATGAGTAGAATCGAGGGGACTTTGCCTGGAAGCTATGGTCTTTACCAGCAAAACCGCGGGCCTGTGACCACCAACAGAACAGAAGATTACCCGGACGTCAAATTGCCTAATGGCAGTAGTGTGATTCAGGCAAGCAACAGTAGTGTGTCAGATACTGTTGATGGTAGGGATTCTGGGAATTTCCAAGATGACGAGAGTGGTTCAAGATCAAGGAATGCTGTATCGCCTGCTGCTAGTAATCATGTTGAGGCAGAATGGATTGAACAGTATGAGCCCGGCGTCTATATAACACTGGTTGCCCTGCGTGATGGAACTCGAGATCTAAAGCGAGTGCGCTTCAGCCGGAGAAGATTTGGCGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGCGAAAAGGTATACGAAAAGTACAATGTTCGAAGCACAGACAAGTCTACGGGCCAAGCATCACGCAGGGGAGAGGGTGCTGGTTCACCTGTTCTATAA 3378 0.4515 MADLVSHRNADRDIDQALIALKKGAQLLKYGRKGKPKFCPFRLSSDELSLIWISSSGEKSLKLSSISRIIPGQRTAVFQRYLRPEKDYLSFSLIYNHGKRSLDLICKDKVQAELWITGLKALISSGQGGRSKIDGWSDGGLCLDDSKDLTSSSPSESSVSASHTQDTSSPDISVSVPNTSPKSFQPENTLNIERSHAPSNPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICESVVKVGADKNGSYLSPRADILLPKPLESNVVLDVLQIACGVKHAALVSRQGEMFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHTCAVTMAGELFTWGDGTHKAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKSRLGHGDKEARLEPTCVPSLIDHNFYRIACGHSLTAGLTTPGQVFTMGSTVYGQLGNPQSDGKLPCLVQDKLAGEPVEEIACGAYHVVVLTSKNEVYTWGKGANGRLGHGDVEDRKAPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCAACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCHAKLNKVIDSGNNNRRNAMPRLSGENKDRLEKSDLRLTKSAVPSNMDLIKQLDSKAAKQGKKADTFSLVRASQAPSLLQLKDVVLSTAVDLKRTVPRPVLTPSGASSRSVVSSRSVSPFSRRSSPPRSATPIPTTSGLSFSKNISDSLKKTNELLNQEVLKLRAQVETLRQRCELQELEVQRSAKKTQEAMSLAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGIYDAENIRPAYVPNGLEPNGIHHPDLNGEHHTRAESISGSSLASVGLEYSLMSRIEGTLPGSYGLYQQNRGPVTTNRTEDYPDVKLPNGSSVIQASNSSVSDTVDGRDSGNFQDDESGSRSRNAVSPAASNHVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEKYNVRSTDKSTGQASRRGEGAGSPVL* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0697 1125 Pfam Transcription factor BRX N-terminal domain 883 918 IPR027988 -
Lja5g0697 1125 Pfam FYVE zinc finger 626 692 IPR000306 GO:0046872
Lja5g0697 1125 Gene3D - 459 637 IPR009091 -
Lja5g0697 1125 Coils Coil 832 873 - -
Lja5g0697 1125 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1108 - -
Lja5g0697 1125 MobiDBLite consensus disorder prediction 974 988 - -
Lja5g0697 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 300 351 IPR000408 -
Lja5g0697 1125 MobiDBLite consensus disorder prediction 1001 1019 - -
Lja5g0697 1125 ProSiteProfiles BRX domain profile. 1047 1102 IPR013591 -
Lja5g0697 1125 SMART fyve_4 624 693 IPR000306 GO:0046872
Lja5g0697 1125 MobiDBLite consensus disorder prediction 931 950 - -
Lja5g0697 1125 MobiDBLite consensus disorder prediction 1103 1125 - -
Lja5g0697 1125 Coils Coil 888 908 - -
Lja5g0697 1125 MobiDBLite consensus disorder prediction 784 828 - -
Lja5g0697 1125 CDD PH_PLC_plant-like 12 124 - -
Lja5g0697 1125 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 445 455 IPR000408 -
Lja5g0697 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 522 573 IPR000408 -
Lja5g0697 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 574 625 IPR000408 -
Lja5g0697 1125 SUPERFAMILY RCC1/BLIP-II 238 627 IPR009091 -
Lja5g0697 1125 Gene3D - 13 129 IPR011993 -
Lja5g0697 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 352 406 IPR000408 -
Lja5g0697 1125 PRINTS Chromosome condensation regulator RCC1 signature 393 409 IPR000408 -
Lja5g0697 1125 PRINTS Chromosome condensation regulator RCC1 signature 569 590 IPR000408 -
Lja5g0697 1125 PRINTS Chromosome condensation regulator RCC1 signature 409 423 IPR000408 -
Lja5g0697 1125 PRINTS Chromosome condensation regulator RCC1 signature 352 368 IPR000408 -
Lja5g0697 1125 PRINTS Chromosome condensation regulator RCC1 signature 511 529 IPR000408 -
Lja5g0697 1125 PRINTS Chromosome condensation regulator RCC1 signature 283 296 IPR000408 -
Lja5g0697 1125 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Lja5g0697 1125 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1108 - -
Lja5g0697 1125 MobiDBLite consensus disorder prediction 147 231 - -
Lja5g0697 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 407 455 IPR000408 -
Lja5g0697 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 300 348 IPR000408 -
Lja5g0697 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 469 516 IPR000408 -
Lja5g0697 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 522 570 IPR000408 -
Lja5g0697 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 575 622 IPR000408 -
Lja5g0697 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 352 403 IPR000408 -
Lja5g0697 1125 Pfam Transcription factor regulating root and shoot growth via Pin3 1046 1101 IPR013591 -
Lja5g0697 1125 SUPERFAMILY PH domain-like 13 123 - -
Lja5g0697 1125 Gene3D - 185 458 IPR009091 -
Lja5g0697 1125 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 286 296 IPR000408 -
Lja5g0697 1125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 698 IPR013083 -
Lja5g0697 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 407 458 IPR000408 -
Lja5g0697 1125 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 630 692 IPR017455 -
Lja5g0697 1125 SUPERFAMILY FYVE/PHD zinc finger 626 700 IPR011011 -
Lja5g0697 1125 MobiDBLite consensus disorder prediction 147 230 - -
Lja5g0697 1125 MobiDBLite consensus disorder prediction 787 828 - -
Lja5g0697 1125 Pfam Pleckstrin homology domain 42 123 IPR001849 -
Lja5g0697 1125 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 393 403 IPR000408 -
Lja5g0697 1125 MobiDBLite consensus disorder prediction 697 717 - -
Lja5g0697 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 470 521 IPR000408 -
Lja5g0697 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 238 299 IPR000408 -
Lja5g0697 1125 MobiDBLite consensus disorder prediction 973 1041 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0697 Lja-Chr5 6279185 6286620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0697 1048 1118 Major Intrinsic Protein MIP AT1G31880 46.479 3.44e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0697 - - gmx:100783270 1919.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2724 2 40750560 40761846 Lja5g0697 5 6279185 6286620 PCT