LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g0684	ATGGCAAGTGCTGCTTCTTCCTTTCATTGTTACTTGGTAGTTCTCACTCTGGTTCTCCTTGGTTGTTTCAGTAGCTGCATTTCAAGTCAGATTGATTTGGGGTCGAGATTATTGGCTAGCAAGGACCAAAAATGGCTTTCTGAAAATGGCACATTTGCTTTGGGGTTCACTCCAGCTGCAAACACTGATAATAACAGATTATTTACTTTGGCCATTTGGTTTGCAAGGCTTCCAGGAGATCCAACTTTAGTTTGGTCACCTAATAGAGACTCTCCTGTATCTCAAGATGCAATCTTGGAGCTTGACACCACTGGCAACCTCGTCCTCACGGACGGAGACACCACCATATGGGCCTCAAACACCTCAAATTCTGATGTAGCAGCAGCTGTCATGACAGAATCCGGCAACTTCATCCTCCACACCACCAACAACCACCCTGCGTGGCAGAGTTTTTCTCAACCTTCTGATACACTCCTCCCCAACCAACCTCTCACAGTCTCTTCTGAACTAACATCATCAAAGTCTTCATCTCATGGTGGTAGCTACTATGCTCTCAAAATGCTTCAACAGCCAACTTCCTTAAACCTTGCCCTCACTTACAATCTGCCAGAAACCTACCAGGCTTTGGATGAACACGAACCATTCACCAACTATTCCTACTGGCATGGCCCTGATATCTCCAACGTGACTGGAGAAGTTATAGCAGTTTTAGACCAAGCTGGGAGCTTTGGAATTGTGTATGGAGATTCATCTGATGGAGCAGTTTATGTGTACAAGAATGATGATGATGATGCAGGCTTGTCTTCTGCAATTCATAAATCTAATTCTACACCATTAACTGTTCTTAGGAGACTCACACTGGAGAAGAATGGCAATTTGCGGCTATACCGTTGGGACGATGTGAATGGTTCAAGTCAGTGGGTCTCACAATGGGCTGCAGTTTCAAATCCATGTGACATTGCTGGAATTTGTGGCAATGGGGTTTGTGAATTGGACAGAAGCAAGATAAAAGCCTCTTGCACTTGCTTGCCAGGAACTTCTAAAGTTGGCAGAGATGGCCAGTGCTATGAGAATTCATCTCTTGTTGGAAAATGCAATGGCCAACATGAAAACCAGACATCACTTAGGATGTCAATGGTGCAGCAAACTAACTACTATTTTTCTGAATTTTCTGTAATAGCTAACTATAGTGATGTTGATGTTGCTTCAGTGTCAAAATGTGGGGATGCTTGCTTATCAGATTGTGATTGTGTTGCTTCAGTTTATGGACTAAATGAGGAGAGACCTTACTGTTGGGTATTAAGGAGCTTAAGTTTTGGGGGTTTTGAGGATACTAGCTCTACTTTGTTTGTGAAGGTCAGAGCAAATGGTTCATGGATAGCAGGAGGGTCTAAATCTAATAGTAGCTCTTCTGATGGATTGGGGAGTGCTAAGGAAAAGGCTTTGATTATTCCCATTGTTCTGACCATGATAATCCTCATTGCTTTGCTGTGTTTATTACTGTATTACAGTGTTCACAGAAAAAGAACTATGAGAAGAGAGATGGAAAGTTCCTTAATCTTATCAGGTGCTCCTATGAATTTCACCTACCGCGATTTGCAAATCAGGACAAGCAACTTTTCACAGCTGCTAGGAACAGGTGGGTTTGGAACTGTGTATAAAGGAAGCCTAGGAGATGGTACCCTAGTGGCAGTGAAGAAACTTGACAGGGTTTTGCCCCATGGAGAGAAAGAATTTATCACTGAAGTAAACACCATTGGTTCAATGCATCATATGAATTTGGTTCGCCTATGTGGCTATTGTTCAGAGGGATCACAAAGGCTTCTGGTATATGAGTTCATGAAGAATGGTTCCTTGGATAAATGGATCTTTCCTTCATATCAAGGCAGAGATAGATTGCTAGATTGGACAACTCGTTTTGAGATAGCTATAGCCACCGCACAAGGGATAGCATACTTTCATGAGCAGTGCAGGGATAGGATAATACACTGTGACATCAAACCAGAAAATATATTGTTAGATGAAAATTTTTGTCCTAAAGTTTCTGATTTTGGACTGGCCAAATTGATGAGAAGAGAGCACTCTCATGTGGTAACCATGATTAGAGGCACTAGAGGCTATTTGGCACCAGAATGGGTTAGTAATCGCCCTATAACTGTAAAAGCTGATGTTTACAGCTATGGGATGCTTCTTTTAGAAATCATTGGTGGCAGGAGAAATCTTGACATGTCCTTTGATGCAGAAGACTTCTTCTATCCTGGCTGGGCTTACAAGGAGATGACGAATGGATCAGTAATCAAAGTGGCAGATAGAAGATTAAATGGTGCAGTTGATGAAGAAGAGCTAATGAGAGCTCTCAAAGCTGCCTTTTGGTGCATCCAAGATGAGATTTCGACGCGACCACCAATGGGGGAAGTGGTACGGATGCTGGAAGGTTCAATCAACATTAACACGCCACCGATGCCGCAAACAGTGCTGGAGTTAATTGAGGAAGGTCTAGAGCATGTATACAAAGCTATGAAAAGAGAGTATAATCAGTTCAGCTCATTCACCATTACCAGCCATCTTACATCTCATGCCACATGTAGCAATTCATCAATGTCACCAAGATAG	2613	0.4252	MASAASSFHCYLVVLTLVLLGCFSSCISSQIDLGSRLLASKDQKWLSENGTFALGFTPAANTDNNRLFTLAIWFARLPGDPTLVWSPNRDSPVSQDAILELDTTGNLVLTDGDTTIWASNTSNSDVAAAVMTESGNFILHTTNNHPAWQSFSQPSDTLLPNQPLTVSSELTSSKSSSHGGSYYALKMLQQPTSLNLALTYNLPETYQALDEHEPFTNYSYWHGPDISNVTGEVIAVLDQAGSFGIVYGDSSDGAVYVYKNDDDDAGLSSAIHKSNSTPLTVLRRLTLEKNGNLRLYRWDDVNGSSQWVSQWAAVSNPCDIAGICGNGVCELDRSKIKASCTCLPGTSKVGRDGQCYENSSLVGKCNGQHENQTSLRMSMVQQTNYYFSEFSVIANYSDVDVASVSKCGDACLSDCDCVASVYGLNEERPYCWVLRSLSFGGFEDTSSTLFVKVRANGSWIAGGSKSNSSSSDGLGSAKEKALIIPIVLTMIILIALLCLLLYYSVHRKRTMRREMESSLILSGAPMNFTYRDLQIRTSNFSQLLGTGGFGTVYKGSLGDGTLVAVKKLDRVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSQRLLVYEFMKNGSLDKWIFPSYQGRDRLLDWTTRFEIAIATAQGIAYFHEQCRDRIIHCDIKPENILLDENFCPKVSDFGLAKLMRREHSHVVTMIRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDMSFDAEDFFYPGWAYKEMTNGSVIKVADRRLNGAVDEEELMRALKAAFWCIQDEISTRPPMGEVVRMLEGSININTPPMPQTVLELIEEGLEHVYKAMKREYNQFSSFTITSHLTSHATCSNSSMSPR*	871

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g0684	870	Gene3D	Phosphorylase Kinase; domain 1	502	613	-	-
	Lja5g0684	870	PANTHER	OS07G0415500 PROTEIN	10	870	-	-
	Lja5g0684	870	SMART	serkin_6	538	810	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja5g0684	870	SUPERFAMILY	Protein kinase-like (PK-like)	516	811	IPR011009	-
	Lja5g0684	870	ProSiteProfiles	Bulb-type lectin domain profile.	30	152	IPR001480	-
	Lja5g0684	870	Gene3D	-	25	153	IPR036426	-
	Lja5g0684	870	ProSiteProfiles	Protein kinase domain profile.	538	814	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja5g0684	870	CDD	B_lectin	46	154	IPR001480	-
	Lja5g0684	870	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT	10	870	-	-
	Lja5g0684	870	Gene3D	Transferase(Phosphotransferase) domain 1	614	827	-	-
	Lja5g0684	870	CDD	STKc_IRAK	544	812	-	-
	Lja5g0684	870	PIRSF	SRK	2	862	IPR024171	GO:0004674
	Lja5g0684	870	Pfam	S-locus glycoprotein domain	279	346	IPR000858	GO:0048544
	Lja5g0684	870	Pfam	D-mannose binding lectin	82	169	IPR001480	-
	Lja5g0684	870	ProSitePatterns	Protein kinases ATP-binding region signature.	544	567	IPR017441	GO:0005524
	Lja5g0684	870	SUPERFAMILY	alpha-D-mannose-specific plant lectins	83	168	IPR036426	-
	Lja5g0684	870	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	661	673	IPR008271	GO:0004672\|GO:0006468
	Lja5g0684	870	SMART	blect_4	36	154	IPR001480	-
	Lja5g0684	870	Pfam	Protein kinase domain	541	741	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g0684	Lja-Chr5	6137603	6142643	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g0684	492	820	Receptor kinase-like Gene Family	AT5G20050	43.258	6.98e-83	271

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Lja5g0684		Pkinase	1.8e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g0684	-		-	gmx:100775424	1461.05