Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0680 ATGAAGGCTGATGCTTTGTCAAAAATGAATCACCTTAAGTTGCTCATTCTTAAAGGTGTGAACTTTTCAGGAAGTCTCAATCATCTTTCCAGCGAATTGCAATATCTTTCTTGGAAAAAGTATCCTTTCCAATGTTTGCCACCAAGTTTTCGACCAGATAAACTTGTTGAATTGATCCTGCATAGTAGCATCCAACAACTATGGGAAGGCTCAAAGCCTCTACACAATTTGAGAGGAATGGATCTTTCTAACTCGAAGAATCTTATTAAGATGCCAGAACTTAGGGATGCCCCAAATCTTGAGCGGCTAGATCTTGGAGGATGTATAAACCTCTTTCAGACCAATCAGATGTTAGAGAAACCAAAGGATGCAGAACACTTAGAGAGATTTGAAATGAATGAAAGTACCATCCAACAGCAGGCAACATCATCTCTCTACAAAGTTCTGACATTGCCTTTTGAATTTATGTATTCTCGAAGACGTGAAGATTCGATTGGTTTATTGTTGCCTGATTTGCCTCATTTCTCATGTTTGCAACATCTTGACCTCAGCTTTTGTAATCTACGTCAGGTCCCTGATGCTATTGGGTGGTTACATTCTTTAGAAGACTTAGATTTGGGGGGAAACAATTTTATTTCACTGCCTCCTAGCATCAAAGAACTTTCCAAACTTAGAGTTTTGAACTTAGAGCACTGTAAGCAGTTGAGATATTTTCCTGAGCTCCCATCAAGAACCCAAGGATGGGTTGTTCGTAGACCTCACGCAGGATTGTATATTTTCAATTGTCCAAAATTGCGTGTGATAGAGCACTGTTATAACGTGGTTTTTTCTTGGATGATCCAAATCCTTAAGGTGCACATGCGATCCCCTTTCTGCAAGGGTCGTATTCAAGTTGTTATTCCTGGAGCTCAAATTCCAAGGTGGTTCAACAAACAAAATGTGGGCTATTCAATAAGCTTGGATCCATCTCCCTCTATTTGTAACCAAAATTGGATAGGTGTTGCTTGCTGTATAGAATTTGTGACGGGTGGCCCAATGAAATTCAATGATGAAAGGCTATTATATTTTAATGGAACAAATGATTTTGATGGTGTGGAATTAAGCACCCACATTCATTGTTCCCAAGGTGAGGTGAGAAAATGCGGGTATCGCTGGGTATTTAAGGAAGATCTGGAACAGTTAAACCTACAAATGATGTATAGTGGAAATACATCAACTCGAAGGCACAAGTTCATAACTGATGATTAG 1248 0.3926 MKADALSKMNHLKLLILKGVNFSGSLNHLSSELQYLSWKKYPFQCLPPSFRPDKLVELILHSSIQQLWEGSKPLHNLRGMDLSNSKNLIKMPELRDAPNLERLDLGGCINLFQTNQMLEKPKDAEHLERFEMNESTIQQQATSSLYKVLTLPFEFMYSRRREDSIGLLLPDLPHFSCLQHLDLSFCNLRQVPDAIGWLHSLEDLDLGGNNFISLPPSIKELSKLRVLNLEHCKQLRYFPELPSRTQGWVVRRPHAGLYIFNCPKLRVIEHCYNVVFSWMIQILKVHMRSPFCKGRIQVVIPGAQIPRWFNKQNVGYSISLDPSPSICNQNWIGVACCIEFVTGGPMKFNDERLLYFNGTNDFDGVELSTHIHCSQGEVRKCGYRWVFKEDLEQLNLQMMYSGNTSTRRHKFITDD* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0680 415 Gene3D Ribonuclease Inhibitor 1 155 IPR032675 -
Lja5g0680 415 ProSiteProfiles Leucine-rich repeat profile. 200 221 IPR001611 GO:0005515
Lja5g0680 415 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 168 332 - -
Lja5g0680 415 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 117 - -
Lja5g0680 415 Gene3D Ribonuclease Inhibitor 161 289 IPR032675 -
Lja5g0680 415 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 168 332 IPR044974 GO:0006952
Lja5g0680 415 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 117 IPR044974 GO:0006952
Lja5g0680 415 Pfam Leucine rich repeat 178 233 IPR001611 GO:0005515
Lja5g0680 415 Pfam C-JID domain 300 392 IPR045344 -
Lja5g0680 415 SUPERFAMILY L domain-like 4 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0680 Lja-Chr5 6115414 6120952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0680 4 246 WRKY Transcription Factor Family AT4G12020 32.210 9.11e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0680 - - lja:Lj5g3v1973380.2 864.374