Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0676 ATGGCAGAGCACCCACCATCACCAAAAGCTTACAAACTAACAGCCACTTCAATCTCCTACACCAAATCAACCACCACCACCACTTCATTCTTCCTCTTCAAACACTGCACACCAACCCCACCAACTCACATCCTCAAAGATGTCTCCCTCACCGCCTACCCCTCCGAGATCCTCGCCGTCGTCGGCCCCAGTGGCGCCGGAAAGTCCACTCTTCTCGACATCCTCTCCGCTCGAAGATCGCCTTCGAGTGGCACTCTCTCCCTCAACTCCTCCCCTCTCAACCCTTCATCCTTCCGCAAACTCTCTGCCTATGTCCCTCAACACGATGCATGCCTTCCTCTGCTCACAGTTTCTGAAACCTTCGCCTTCTCTGCTCGCCTTCTAAAGCCTAAAACCTCTGACATCGCAGCCATTGTTTCCGCTCTTCTCTCCGAGCTGAGACTCACCCATTTGGCTAACACAAGGCTAGCTCATGGCCTCTCCGGTGGAGAACGCAGAAGGGTCTCAATTGGCCTAAGCCTCCTTCATGATCCTGCAGTTCTGCTCCTTGATGAACCTACCTCTGGCCTTGACAGCACCTCTGCTTTCAAAGTCATGCAGATTCTCAAATCAACTTGTGTTTCAAGAAACAGGACAATCATCCTCTCAATTCACCAACCAAGCTTCAAAATCCTCTCCTGCATTGACAAAGTCTTGCTTCTGTCAAAAGGGACTGTGGTTCACCATGGAAGCCTTGCTTCACTGCAATCCTTCCTTCACACAAAAGGGTTCACTGTTCCTCATCAGCTCAACGCATTGGAGTATGCCATGGAAATACTAAACCAGCTGAATGAGGCTAACCCCACGACTCTGCCAATTCTCCCTGAATCACCTTCTACAAACTCTGTTTCTGATCACAATGGAACTCAAAACAGAGAGATCAGGTACCAGAGCTCAAGGATTCATGAAATTCACACTCTTTACATCAGGTTTTGGAAGGTGATTTACAGAACTAAGCAGCTTCTTTTCACAAACACACTAGAAGCACTGGTTGTGGGTCTTGTTTTAGGAACAATTTACATCAACATTGGGTTTGACGAGGAAAGCATTCAGAAAAGGTTTGAAACTTCAAGTGGGGTTTACAGGCTCTCATCTTATCTCATTGCAAACACTCTTGTTTTCTTGCCATACTTGTTTGTAGTTGCTGTCATATACTCTATTCCTGTCTACTTCTTAGTGGGACTCTGTTCATCTTGGCTCTCTTTTGCTTACTTTGTTCTTGTCATATGGGTCATAGTTCTAATGGCAAATTCCTTTGTCCTGTTCTTGAGTTCTCTTGCACCTAACTACATTTCTGGAACTTCACTCTTGACAGTGCTTCTTGCAGCGTTTTTTCTCTTCTCTGGCTACTTTATCTCAAAACAGAACATGCCCAAGTACTGGCTTTTCATGCATTTCTTGTCCATGTACAAATATGCTCTTGATGCACTTCTTATCAATGAGTACTCTTGCTTGGTTACAAAGTGTTTGTTGTGGTATGAAGAGAATAATCAGGAGTGCATGATTACTGGCGGTGACGTGCTGCGCCAGAGAGGGCTCAGCGAGAGAGAAAGATGGAGCAATGTGTACTTTTTGATTGGGTTCTTTGTGTTTTACAGAGTGCTATGTTTCTTGGTTTTGATTAGAAGAGTTTCAAGATCCAAAACTTGA 1689 0.4547 MAEHPPSPKAYKLTATSISYTKSTTTTTSFFLFKHCTPTPPTHILKDVSLTAYPSEILAVVGPSGAGKSTLLDILSARRSPSSGTLSLNSSPLNPSSFRKLSAYVPQHDACLPLLTVSETFAFSARLLKPKTSDIAAIVSALLSELRLTHLANTRLAHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFKVMQILKSTCVSRNRTIILSIHQPSFKILSCIDKVLLLSKGTVVHHGSLASLQSFLHTKGFTVPHQLNALEYAMEILNQLNEANPTTLPILPESPSTNSVSDHNGTQNREIRYQSSRIHEIHTLYIRFWKVIYRTKQLLFTNTLEALVVGLVLGTIYINIGFDEESIQKRFETSSGVYRLSSYLIANTLVFLPYLFVVAVIYSIPVYFLVGLCSSWLSFAYFVLVIWVIVLMANSFVLFLSSLAPNYISGTSLLTVLLAAFFLFSGYFISKQNMPKYWLFMHFLSMYKYALDALLINEYSCLVTKCLLWYEENNQECMITGGDVLRQRGLSERERWSNVYFLIGFFVFYRVLCFLVLIRRVSRSKT* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0676 562 SMART AAA_5 54 238 IPR003593 -
Lja5g0676 562 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 13 261 IPR003439 GO:0005524
Lja5g0676 562 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 5 367 - -
Lja5g0676 562 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 368 557 - -
Lja5g0676 562 PANTHER ABC TRANSPORTER G FAMILY MEMBER 8 5 367 - -
Lja5g0676 562 PANTHER ABC TRANSPORTER G FAMILY MEMBER 8 368 557 - -
Lja5g0676 562 ProSitePatterns ABC transporters family signature. 160 174 IPR017871 GO:0005524
Lja5g0676 562 Gene3D - 32 283 IPR027417 -
Lja5g0676 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 253 IPR027417 -
Lja5g0676 562 Pfam ABC-2 type transporter 218 280 IPR043926 GO:0140359
Lja5g0676 562 Pfam ABC transporter 45 188 IPR003439 GO:0005524
Lja5g0676 562 Pfam ABC-2 type transporter 368 495 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0676 Lja-Chr5 6083021 6084799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0676 40 255 Calmodulin-binding Proteins AT2G36910 29.832 2.47e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0676 K05681 - gmx:100790712 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0676 5 6083021 6084799 Lja5g0676 5 6083021 6084799 ECH