Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0674 ATGGCTGAGGACTGGGATCTCTTTGCCATCGTGAGAAGCTGCCAATCAGCCACCAATACTGCCACGGCCCCAATAGGAAATCCACCACCTCCTACCACCAACACCACACCACCTTCCTTGGCCACTTTTACTTTCAAGGAAGAATATAATGAGGCATTCTCTTTTCCCAATATAGTGCAACCTATAACCAATGAGTTTCATGACCTAAACCAATTGCTCACACCCTTTAACCCCACCACCAACACCACTAGTAGTGCTAATGGTATCAATACTAATTCCCCTGATTTTGCAGGATGCATTGGACAACACCAAAGCAACCACCACCATCTTTCTGTGCTTGCCCCTCCTTCTAAAACCTCCATTTGGCCCTCCACTTCAAGTTTCAACAGAAGACAACATGTACAGAAAAACCAGAATCAGCTACCAATAGTTCAGAAACAGGATTTTCAAGTACCCCAGAGCAATTCTGCTTTGATTTCATCAAACCCACAACCTCAAACACCCAAAGCAAGAAAAAGAAAAAACCAACAGAAGAAAATGGTGTGCCATGTCACAGCAGATAACCTCTCATTAGATTTGTGGGCATGGCGTAAATATGGACAAAAACCCATCAAGGGTTCTCCATATCCAAGGAACTATTACAGGTGTAGCAGCTCCAAAGGTTGTGCCGCACGAAAGCAAGTTGAACGGAGCAACACTGAAGATGATATCTTCATCGTTACATACACCGGAGACCACTCGCATCCTAGACCAACTCACCGAAACTCGCTCGCCGGGAGTACCCGGAACAAGTCTATGCCATCTTTGCAAACCAAAACTACTAGTACTACTACTTCTTGTTCTTCTCCTCTGTCCTCATCTACTCCGGTGTACCCTCCGGCAGAAGATCCGCCGGCAACGGATGACCCGGATCCAGACCCTGAAATTGAAACTGACAATGACGTCGAAGATGAAGCTGACATTCTGCTACCCATTGATGTAGCCATGCCCGATGATATGTTTATGGACTTTGATCACTTTCCCAGTGGCAGAGGCAGTGGTTAA 1044 0.4598 MAEDWDLFAIVRSCQSATNTATAPIGNPPPPTTNTTPPSLATFTFKEEYNEAFSFPNIVQPITNEFHDLNQLLTPFNPTTNTTSSANGINTNSPDFAGCIGQHQSNHHHLSVLAPPSKTSIWPSTSSFNRRQHVQKNQNQLPIVQKQDFQVPQSNSALISSNPQPQTPKARKRKNQQKKMVCHVTADNLSLDLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCAARKQVERSNTEDDIFIVTYTGDHSHPRPTHRNSLAGSTRNKSMPSLQTKTTSTTTSCSSPLSSSTPVYPPAEDPPATDDPDPDPEIETDNDVEDEADILLPIDVAMPDDMFMDFDHFPSGRGSG* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0674 347 Gene3D WRKY domain 173 244 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja5g0674 347 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 340 - -
Lja5g0674 347 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 340 IPR044810 GO:0003700
Lja5g0674 347 SUPERFAMILY WRKY DNA-binding domain 187 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja5g0674 347 MobiDBLite consensus disorder prediction 299 319 - -
Lja5g0674 347 MobiDBLite consensus disorder prediction 156 170 - -
Lja5g0674 347 MobiDBLite consensus disorder prediction 253 289 - -
Lja5g0674 347 Pfam WRKY DNA -binding domain 192 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g0674 347 SMART WRKY_cls 190 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g0674 347 ProSiteProfiles WRKY domain profile. 185 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g0674 347 MobiDBLite consensus disorder prediction 156 179 - -
Lja5g0674 347 MobiDBLite consensus disorder prediction 241 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0674 Lja-Chr5 6073274 6074802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0674 1 343 WRKY Transcription Factor Family AT4G01250 36.232 1.76e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja5g0674 WRKY 8.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0674 K13425 - aprc:113871802 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1845 3 20906793 20908656 Lja5g0674 5 6073274 6074802 ECH
Lja1g3051 1 36914094 36915753 Lja5g0674 5 6073274 6074802 ECH
Lja4g0384 4 3088280 3090114 Lja5g0674 5 6073274 6074802 ECH
Lja5g0674 5 6073274 6074802 Lja5g0674 5 6073274 6074802 ECH