Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0668 ATGGTGTCAGAAAACCCGAATGCTTCAGAGGCTATATACTTGGAACCCTTAGCAGATTCGGTGGAGGACCCTGCCAAGAAGACACGCAAACCATACACCATCACCAAGTCTAGAGAGAACTGGACCGAACCTGAGCATGATAAGTTCCTTGAAGCTCTTCAACTATTTGACCGTGACTGGAAAAAGATTGAAGCTTTTGTTGGATCAAAAACAGTTATCCAGATACGTAGCCATGCACAGAAATATTTTCTTAAAGCTCAGAAGAGTGGGAAAAGTGAACATCTTCCTCCACCCAGACCAAAACGAAAAGCGGCTCATCCATATCCTCAGAAAGCTTCCAAAAACGTTCCAGTACTCTCGCATGTTTTAGGATCCTCTCAATCTTCATCTGCTTTGCTTGAACCTGGATCCATCCCCAAGCATGAATCTTCGCCAATTCTTAAAACTCCTATACTTAACACTTCAGTTTCTTCCGGGTCAAACAACACTTTGCAGACAACAGCCAATGTATTACATGGTCAAAAAGTGAATAATTGTTGCAGCAGCAATGAAAGCACTCCTAGAGCACGCGTGGTTGGTGAATCTAATGGTCAAGGAAATAATAACCATCCATTGAAAGTTCTTCCTGATTTCACTCAAGTATACAGATTCATTGGCAGTGTATTTGACGCAAATGTAACTGGGCATCTACAGAAACTTAAAAAGATGGACCCTTTAGATGTTGAGACGGTGCTGCTGTTGATGAGAAACCTGTCTATCAATTTAACAAGTCCAGGTTTCGAGGATCACAGAAGGCTGCTCGCGTCATATGAGGTGGAACCCGAGATAGATAATTATATCAATGTAGATCAAGCCATGCATGATGAGCAGTTGAAGAGTGCTACTTAG 888 0.4223 MVSENPNASEAIYLEPLADSVEDPAKKTRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKAQKSGKSEHLPPPRPKRKAAHPYPQKASKNVPVLSHVLGSSQSSSALLEPGSIPKHESSPILKTPILNTSVSSGSNNTLQTTANVLHGQKVNNCCSSNESTPRARVVGESNGQGNNNHPLKVLPDFTQVYRFIGSVFDANVTGHLQKLKKMDPLDVETVLLLMRNLSINLTSPGFEDHRRLLASYEVEPEIDNYINVDQAMHDEQLKSAT* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0668 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 36 85 IPR006447 GO:0003677
Lja5g0668 295 ProSiteProfiles SANT domain profile. 36 91 IPR017884 -
Lja5g0668 295 CDD SANT 40 83 IPR001005 -
Lja5g0668 295 Gene3D - 40 88 - -
Lja5g0668 295 MobiDBLite consensus disorder prediction 86 111 - -
Lja5g0668 295 SMART sant 37 85 IPR001005 -
Lja5g0668 295 ProSiteProfiles Myb-like domain profile. 33 83 IPR001005 -
Lja5g0668 295 MobiDBLite consensus disorder prediction 1 31 - -
Lja5g0668 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 87 IPR017930 -
Lja5g0668 295 PANTHER SWI/SNF COMPLEX-RELATED 17 289 - -
Lja5g0668 295 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Lja5g0668 295 Pfam Myb-like DNA-binding domain 38 83 IPR001005 -
Lja5g0668 295 PANTHER PROTEIN REVEILLE 6 17 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0668 Lja-Chr5 6025290 6029435 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja5g0668 Myb_DNA-binding 3.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0668 - - gmx:100794389 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2669 2 37645032 37659897 Lja5g0668 5 6025290 6029435 ECH
Lja5g0668 5 6025290 6029435 Lja5g0668 5 6025290 6029435 ECH