Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0666 ATGGCGGCAGGACTCACCGCCGCCACAACCTTAAACCCCTCCAGTCTTCTCCAAACCTCAACCCTTTTCCCTAAGCTAACCCCAACATTGTTCTTCACCCCCTTAACCTTAAGAACTTCCCATCACAGAACAGTCCTTCAAACCCGGAGAAGAATCAGGGGCTTCACCGTGTGTATCCTTACAGAGGGTCCAAAACCAGGCATACAGATCAAAACAGAGGAAGAAGAGGAACCACCTCCCAACATAGTGATTCCTCAAATCATGTCAGCACGTGTGGCAGAGAAATTGGCAAGAAAAAAGTCAGAGAGGTTTACTTACCTTGTTGCAGCTGTTATGTCTAGCCTTGGTGTCACTTCTATGGCTATCTTGGCAGTTTACTATAGATTCTCATGGCAAATGGAGGGTGGACAAATTCCTATGTCTGAAATGTTTGGCACATTTGCCTTATCAGTGGGAGCTGCAGTGGGCATGGAGTTTTGGGCTAGATGGGCTCACAAAGCTCTCTGGCATGCTTCCTTGTGGCACATGCATGAATCACACCATCGACCAAGAGAAGGACCGTTCGAGCTGAACGATGTTTTTGCTATAATCAACGCTGTTCCTGCCATTGCTCTTCTCTCCTATGGTTTTTTTCACAAGGGATTGGTTCCTGGACTCTGTTTTGGTGCTGGTCTAGGAATCACAGTGTTTGGGATCGCCTATATGTTTGTCCATGATGGATTGGTCCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCAGAAGAGTTGCTTCTGCTCATCAACTACACCATTCGGACAAATTCAACGGGGTGCCATATGGGCTGTTTTTGGGACCAATGGAACTTGAAGAAGTAGGAGGGCTAGAAGAGCTAGAGAAGGAAATAAGTAGGAGAAAAAAATCATATACTGGTTCATGA 930 0.4656 MAAGLTAATTLNPSSLLQTSTLFPKLTPTLFFTPLTLRTSHHRTVLQTRRRIRGFTVCILTEGPKPGIQIKTEEEEEPPPNIVIPQIMSARVAEKLARKKSERFTYLVAAVMSSLGVTSMAILAVYYRFSWQMEGGQIPMSEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFHKGLVPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIANVPYFRRVASAHQLHHSDKFNGVPYGLFLGPMELEEVGGLEELEKEISRRKKSYTGS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0666 309 Pfam Fatty acid hydroxylase 153 281 IPR006694 GO:0005506|GO:0008610|GO:0016491
Lja5g0666 309 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 6 309 IPR045019 GO:0016491
Lja5g0666 309 PANTHER BETA-CAROTENE HYDROXYLASE 6 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0666 Lja-Chr5 6004049 6006770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0666 1 223 Chloroplast and Mitochondria Gene Families AT4G25700 59.912 1.30e-90 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0666 K15746 - gmx:547758 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2665 2 37473136 37476388 Lja5g0666 5 6004049 6006770 ECH
Lja5g0666 5 6004049 6006770 Lja5g0666 5 6004049 6006770 ECH
Lja2g2665 2 37473136 37476388 Lja5g0666 5 6004049 6006770 PCT