Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0660 ATGTCGTCACCGGGCGGTGGTGCCCCCAATTTCTACGGTGGTTTCCCTGGCCGATCCAACAACAACAACAACTTCACAACCACCACCTCCACCACACACAACCTTCACCCTCTCTACCGAACCCAGCAGCAACTTCCTCCAATTTTTCTCGACCCTTCTTTATCCCACATCGCTCAGCGCCAAACACCATCAATCATCGGAAAACGCACCCTCGCTGAGTTTCAAATCCAGAATCATCAAAATCAAAATCAAAATCAAAATCAAATTCAAAATCCTGTTCTCTCCAATCTTCTACTTCGTTCTGTTAAACCCAGAAATTTCCACCATGCTTCTCCAATCGATTTCTCCACTTCCTCACCAGAATTCTCTAACTCTTTTTCTTCTACGTCGTCGTTTCCGTCACAGCGTTTGCCGTTTTATAACCACCTTCACTCAAACGTTTCTCAGCAACAATCCCCATTTCCAATCACCAATTCAAATCCCACAAACCCTAATTTCCCGTACCAGATTTCCAATTTCTCGCAGGTGCTCAACAGAGCAACCACCACCACCACCACCCATGAACCGGAGAAGAGGGTGATGGACCACCGTCTACAGGAATTGGAAAAGCAGCTTCTGGAAGACAGTGATGATGATGAAGAAGGTGATGCGGTTTCTGTGATCACAAATTCTGAATGGTCTGAGACGATACAAAGCTTGATTGGTGCGGGTCAGAACAACCCGACCCGGAAACCCGATTTGTCGTCGCCGACTTCCTCAACGACGTCGACGAATTCAACCATAACTTCTATGGCTTCCCCTGCTCCCACATGTTCAAAGCAGTCGTTGATGGAGGCCGCATCGGCGATTTCCGAAGGGAAATTGGAGGCTGCATCGGAGATCTTATCACGTTTGGGTCAGGCTTCGAACCCGAATGGGAATTCGGATCAACGGTTCACGGATTGCATGGTTTCCGCGCTGAAATCGAGGCTGAACCAGGCTGAAAATCCACCTCCGGTGGCGGAGTTGTTCAGCAGGGAGCACGCAGAGTCGACCCAGTTGCTCTTCGAACACAGCGTCTGCTTCAAGGTCGCTTTCATGGCTGCGAACCTCGCAATCCTGGAAGCCGCATTTGACGATACCGCTACCACCAGCATGAAGCTCTGCGTGGTGGATTTCGAAATCGGGCATGGGAGACAATACGTTAGCCTTCTGCATGAGTTATCGGCGCGTCTCGCCGGGAAACCGGTGACGGTGAAGGTTATAGCAGTTGCCGAAGACGGAGCTGACGAGAGGTTGAAGACGGTGGGTGACATGCTGGGTCAGCAAGCTGAACGACTCAGGATCGGGTTTGAATTCAAGGTGGTGAGTTGCAAACTCGCCGAGTTGACCCGGGAGGCACTCGGTTGCGAACCGGACGAGACGCTGGCTGTGAACTTCGCGTTCAAGCTTTTCAGAATGCCCGACGAGAGCGTGTCGACGGAGAATCCCCGCGACGAGCTTCTGCGGCGCGTGAAGGCGCTATCCCCGCGCGTGGTTACTCTGGTGGAGCAGGAGCTGAACACTAATACGGCGCCGTTTGTGCCGCGCGTGACTGAGTCGTGCTCTTACTACAGCGCGTTGTTTGACTCTATTGAGTCCACGGTGGCGCGTGAGAGCTTGGAGCGTGTGAAGATCGAGCAAGGACTGAGTCGGAAGGTGGGGAACTCGGTGGCTTGTGAAGGGAGGGATCGCGTGGAGCGGTGTGAGGTGTTTGGGAAATGGCGCGCGCGTATGAGCATGGCTGGGTTCAGGTTGAGACCGGTGGGGCAGAGGGTGGCTGAGTCAATCACGGCGCAACTCGGTGCAGAAAACCGAGTCACGGTGAAGGAAGAGAACGGTGGGATTTGCTGTGGGTGGGTGGGGAGAACTCTCACCGTCGCATCTGCTTGGCGTTAA 1917 0.5316 MSSPGGGAPNFYGGFPGRSNNNNNFTTTTSTTHNLHPLYRTQQQLPPIFLDPSLSHIAQRQTPSIIGKRTLAEFQIQNHQNQNQNQNQIQNPVLSNLLLRSVKPRNFHHASPIDFSTSSPEFSNSFSSTSSFPSQRLPFYNHLHSNVSQQQSPFPITNSNPTNPNFPYQISNFSQVLNRATTTTTTHEPEKRVMDHRLQELEKQLLEDSDDDEEGDAVSVITNSEWSETIQSLIGAGQNNPTRKPDLSSPTSSTTSTNSTITSMASPAPTCSKQSLMEAASAISEGKLEAASEILSRLGQASNPNGNSDQRFTDCMVSALKSRLNQAENPPPVAELFSREHAESTQLLFEHSVCFKVAFMAANLAILEAAFDDTATTSMKLCVVDFEIGHGRQYVSLLHELSARLAGKPVTVKVIAVAEDGADERLKTVGDMLGQQAERLRIGFEFKVVSCKLAELTREALGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKALSPRVVTLVEQELNTNTAPFVPRVTESCSYYSALFDSIESTVARESLERVKIEQGLSRKVGNSVACEGRDRVERCEVFGKWRARMSMAGFRLRPVGQRVAESITAQLGAENRVTVKEENGGICCGWVGRTLTVASAWR* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0660 638 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 60 637 IPR005202 -
Lja5g0660 638 Pfam GRAS domain family 273 638 IPR005202 -
Lja5g0660 638 MobiDBLite consensus disorder prediction 235 273 - -
Lja5g0660 638 MobiDBLite consensus disorder prediction 1 32 - -
Lja5g0660 638 ProSiteProfiles GRAS family profile. 263 638 IPR005202 -
Lja5g0660 638 MobiDBLite consensus disorder prediction 15 32 - -
Lja5g0660 638 PANTHER SCARECROW-LIKE PROTEIN 8 60 637 IPR030013 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0660 Lja-Chr5 5960994 5962910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0660 28 638 GRAS Transcription Factor Family AT5G52510 48.372 1.05e-159 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja5g0660 GRAS 3.9e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0660 - - aip:107644872 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0660 5 5960994 5962910 Lja5g0660 5 5960994 5962910 ECH
Lja2g2650 2 37010318 37012712 Lja5g0660 5 5960994 5962910 PCT