Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0654 ATGGCAATTGAACAACATCAGAATCTGATCAAAATCACTGGCAAAAGCCATGTGAAACCCAACAAGAATATTGGGAAGAAAGAGTGCCAATTGGTCACATTTGATCTTCCCTACCTAGCTTTCTACTACAACCAGAAGCTGCTTTTTTACAAAGGGGATGGTGATTTTGAGGGAATGGTGGAGAAACTGAAAGATGGACTCAGTGTGGTGTTGGAAGATTTCCATCAACTGGCAGGTAAGTTAAAGAGAGATGAAGAGGAAGTGTTCCAAGTGGAATATGATGATGACATGGCTGGTGTGGAGGTCACAGAGGCCATTGCTGATGAGATTGAGGTAGCAGATCTCACAGTGGCTGAGAGTAGCAGCATTTTGAAGGATTTGGTGCCTTTCACTGAGGTCTTGAATTTGGAAGGGATGCACAGGCCTTTGTTGGCAGTTCAGCTAACCAAGCTCAAAGACGGACTTGTGATGGGGTGCGCGTTCAATCACGCGATTTTGGACGGCACATCCACGTGGCACTTCATGAGCTCATGGGCAGAGACATGTCGTGGCGCTCCCTCCACATCAGCCCCGCCCTTCTTGGAACGGACCAAGGCACGAAACACGCGTGTGAAGCTCGACCTTACCCTTCCTTCAGGCACGCCTACAACCCCCCACATTGATGAAGTGAAGCCCATGCCCAACCCACCACTAAGGGAAAAGATCTTCAATTTCTCTGAGTCAGACATCGATAAAATCAAGTCAACCATTAACGAACCTCCATCGGACGGCTCAAAACCATTCTCAACCTTTCAGACTCTCTCTGTCCACATTTGGCGCCACATCATCCATGCACGCAACATTAAACCAGAAGACCACACCGTGTTCACTGTCTTTGCAGATTGTCGGAAACGAGTTGACCCTCCAATGCCTGAGGCTTACTTGGGGAACCTAATTCAAGCTATATTTACTGTTACAGTGGCAGGGTTGTTGTTGGCAAAACCGCCACAATTCGGTGCTTCTTTGATACAAAAGGCAATTGAAGCGCACAATGCTAAAGTCATTGATGAACGCAACGAAGGTTGGGAGAGTGCGCCGAAGATCTTTGAGTTCAAAGATGCGGGGGTGAACTCTGTGGCGGTTGGTAGTTCACCGAGGTTTAAGGTTTATGATGTGGATTTTGGATGGGGGGAGCCGGAGCATGTTAGGAGTGGGTCCAATAACAAGTTTGATGGGATGATTTATTTGTATCCTGGGAAGAGTGGAGGGAGGAGCATTGATGTAGAGCTGACCTTGGAGGCTGAAGCTATGGGGAGATTGGAGCAAGATAAGGATTTTCTTATGCAGGTCTAG 1332 0.476 MAIEQHQNLIKITGKSHVKPNKNIGKKECQLVTFDLPYLAFYYNQKLLFYKGDGDFEGMVEKLKDGLSVVLEDFHQLAGKLKRDEEEVFQVEYDDDMAGVEVTEAIADEIEVADLTVAESSSILKDLVPFTEVLNLEGMHRPLLAVQLTKLKDGLVMGCAFNHAILDGTSTWHFMSSWAETCRGAPSTSAPPFLERTKARNTRVKLDLTLPSGTPTTPHIDEVKPMPNPPLREKIFNFSESDIDKIKSTINEPPSDGSKPFSTFQTLSVHIWRHIIHARNIKPEDHTVFTVFADCRKRVDPPMPEAYLGNLIQAIFTVTVAGLLLAKPPQFGASLIQKAIEAHNAKVIDERNEGWESAPKIFEFKDAGVNSVAVGSSPRFKVYDVDFGWGEPEHVRSGSNNKFDGMIYLYPGKSGGRSIDVELTLEAEAMGRLEQDKDFLMQV* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0654 443 PANTHER BAHD ACYLTRANSFERASE DCR-RELATED 14 439 - -
Lja5g0654 443 Gene3D - 215 436 IPR023213 -
Lja5g0654 443 Gene3D - 9 208 IPR023213 -
Lja5g0654 443 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 14 439 - -
Lja5g0654 443 Pfam Transferase family 10 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0654 Lja-Chr5 5877866 5880909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0654 42 443 Monolignol Biosynthesis Gene Families AT5G48930 26.147 8.18e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0654 K19747 - gmx:100818158 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0654 5 5877866 5880909 Lja5g0654 5 5877866 5880909 ECH