Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0648 ATGCCAGTTGCGCAACCTACTGCTGCCTCTGGCACTCTCGATGTCATGAAAACAGAAGATGGAAAAGATTCTGTTGATACTTTAGTCAAACAAGCAAATGGATTGGAGCCTGTCCTTTACTATCCCAGGATCGGTGAGAGCTCAGTACAATGGCTGCAATTTCTTCAAGCTCTAGAACAGCCAGAACCAATATGGCCTTTGTTATCTGTTGTGACAAAAGTTCAGTTACGGAAGTGCGAGAAGTGTTCTCGAGAGTTTTGCTCTCCCATTAACTATAGAAGACATCTGCGGATAGACCATCGGTTGAAAAAGCTGGATAAGGACTCTATAAACAATAGGGATCTTTTGGGGGAATATTGGGATAAGCTCTCTGTGGAAGAGGCAATGGAAGTTGTGTCATTCGAGGATATGTTGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAAAAGGTGTGGCAAATCTTAGAAGACAAGCATTTTCTTCTCTTCCACAAAATTATATGAGGGCTGGTTTTTCCCTTTTGGATATGGTTCAATCCAATCCTTCTAGTTTTCCTATATCTTCTCAAGAGTTGTTCAGTATCCTCGACGATGCCAGTGAAGAAACATTTTTATGTGGAACAGCAGTGTCAGTGCAAAGATTTATGTTTGATGGAGAGGCTGGAAAGATTGTCCTTGAACCAAGAAACCTGATTGCTTGCACAAGTTTCTTGCTAGAGCAGAAATTGGTGAAGGCATGTCTTGCTTACAAGGAGGCTGAAGCATTGAGATTGCAGCAGCTGCTGGTGGATGAGGAGGAAGCTGCTCAGAAAAGACAAGCCGAGATTTTAGAGAGGAAGCGCAAGAAGAAGCTTAGACAGAAAGAACAGAAGGCTAGGGAACGACTTGAAGATGACATGAAAATTGACGGAAACATCAGCAGCACAGGAGAGGATATGTCGCCAGCAGAAGCATCTTTGGCTGCATTTGACTTTGAAGCACATAATCCAGATATACCTGCTGATCACGATTCTTCAACACATGTAACTTACCAATGCCCAGACACTACTGAAGGTGTAGACGGGGAAACACAGCCAGGGAATGATTATGACCCTGATCAGATTATAGAGCAACAAACATCACAAGGACATAATCGCCTGCTTCCAATGACTGCCAGACAGCAAGAGCTGCCTAAATCACAGGCGCCTGTAGCCAATGGTTTGTGTGCTAGCCAGAATTCTCAAATGTCAAAGCTTGGAGCCATTCAAAAATATGGAACCAACTGTGATCAGAATGCAGCTCCTATAGTTAACGGTGGTGAAGTTGTGAGCTTGAAGCCTGAACCAAAAACTACTGGGGTGGTTTCAGAAGCCAGGCTGCATAAAGAACCATATGTAAGAAAGAATCATGAAGTTCTGATTGGTTCTGTATCTGTAACACTGGCCAATTGCAGCCAGTCAGAGGGGAGTCTTGTGCCATCTCGAGGGGTCTGCCCGGCAGAGAATCTGGCGAAGCAGAATACTGCTCAGGAGAAGCCAATAAAACTTGATTGCTTCCAGGGAGGCGAGGGCAGTTTGGCCAATTGCAGCCAGTCAGAGGGGACTCTTGTGGCATCTCGAGGGGTCTGCCCGGCAGAGAATCTGGCGAAGCAGAATACTGCTCAGGAGAAGCCAATTAAACTTGATTGCTTCCAGGGAGGCGAGGGCAGTTTGGCCAATTGCAGCCAGTCAGAGGGGACTCTTGTGGCATCTCGAGGGGTCTGCCCGGCAGAGAATCTGGCGAAGCAGAATACTGCTCAGGAGAAGCCAATAAAACTTGATTGCTTCCAGGGAGGCGAGGGCAGTTTAACACCGGTTAATCAGCATGAAAGTAAAGGTCCACTGCCACCTCAAAATGGTGGGGCAATAGCTGAGGTAGTAGATGGAAAAGACGGTCAGAACAGTTTAACATTGTGTAATATAGATGATAATGGTTTGAAGAGCAAGTTTTCCCAAACTGGGGCTAAAGGGGATCGGGAAAGGTTACAGTTCTCCAGCCATGCTGCAAGAGCTTTTCTTGATCAAAGATGGAAAGAAGCCATCTCATCAGACCATGTGAAACTGGTCCTTTCTCCAGATACTACATCTCAGCACAACCAGGATTGCGAAGTAGCACCATGCCTTCCTGCAAATACGGAGAAACCGTTGCCTGCAGCTTCTGGAGGTCCTAAATCCAAACACAGAAAGAAGCCTGGGAAGGAAATGAAGACAAAGTACATTCCCAAGCAAAAACCAACAGCAGCATAG 2262 0.458 MPVAQPTAASGTLDVMKTEDGKDSVDTLVKQANGLEPVLYYPRIGESSVQWLQFLQALEQPEPIWPLLSVVTKVQLRKCEKCSREFCSPINYRRHLRIDHRLKKLDKDSINNRDLLGEYWDKLSVEEAMEVVSFEDMLLEEVPGSSILKGVANLRRQAFSSLPQNYMRAGFSLLDMVQSNPSSFPISSQELFSILDDASEETFLCGTAVSVQRFMFDGEAGKIVLEPRNLIACTSFLLEQKLVKACLAYKEAEALRLQQLLVDEEEAAQKRQAEILERKRKKKLRQKEQKARERLEDDMKIDGNISSTGEDMSPAEASLAAFDFEAHNPDIPADHDSSTHVTYQCPDTTEGVDGETQPGNDYDPDQIIEQQTSQGHNRLLPMTARQQELPKSQAPVANGLCASQNSQMSKLGAIQKYGTNCDQNAAPIVNGGEVVSLKPEPKTTGVVSEARLHKEPYVRKNHEVLIGSVSVTLANCSQSEGSLVPSRGVCPAENLAKQNTAQEKPIKLDCFQGGEGSLANCSQSEGTLVASRGVCPAENLAKQNTAQEKPIKLDCFQGGEGSLANCSQSEGTLVASRGVCPAENLAKQNTAQEKPIKLDCFQGGEGSLTPVNQHESKGPLPPQNGGAIAEVVDGKDGQNSLTLCNIDDNGLKSKFSQTGAKGDRERLQFSSHAARAFLDQRWKEAISSDHVKLVLSPDTTSQHNQDCEVAPCLPANTEKPLPAASGGPKSKHRKKPGKEMKTKYIPKQKPTAA* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0648 753 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 751 - -
Lja5g0648 753 Coils Coil 273 298 - -
Lja5g0648 753 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 105 IPR013087 -
Lja5g0648 753 MobiDBLite consensus disorder prediction 698 753 - -
Lja5g0648 753 ProSitePatterns Zinc finger C2H2 type domain signature. 79 100 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0648 Lja-Chr5 5820824 5827932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0648 667 749 C2H2 Transcription Factor Family AT4G25610 41.860 3.83e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g0648 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0648 - - lja:Lj2g3v0346230.1 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0648 5 5820824 5827932 Lja5g0648 5 5820824 5827932 ECH
Lja2g2634 2 36385157 36390501 Lja5g0648 5 5820824 5827932 PCT