Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0647 ATGATGGGTAGCATTGAAGAAGACACTGTGTATGTTGCGGTGGGGAAGAACGTTGACAAGACCCGACAACTGTTGCATTGGGCATCTCAGAATTTCTCTGCCAAAAAAATTTGCATTCTTCACGTTCACCAAACGTTGGCCGACATAAATCTCCCTGGTTATGAAGCAAAAGATCATGCCATCAAGGCATTCCAAGAACATGGTATTCAAACAGTGCATGAGCTCCTAGACCAATACATTACCACTCTGGTCCCAGCAGGGGTACAGGCATATAAATTGTTGATTGAGAAGGATGACATCGAGAAAGGGATCATAGAAGCTATCGCTCAACACAATATTAGATGGCTTGTAATGGGAGCAGCAGCAGACAAGTATAAGTTGGGGGTTTGGAATTGCAGTAAGGTGGCTGAGCAAGTGTCAGAGAAAGCTATTATTGTACCTGAGCAATCGCTATCCTGCAATGTTTTGTTCATCTACAAGGGAAACCTCATAAGTACTAGGGTAGATATTAAACATACATCTGAAATTGAGACTGCCCCTGCATTGTTGGTGCTCAATTCAAATACAGAAATCAAGCAATCAGAAAACATTAAATCAGAATCTAGATCTGATGCCTTGAAATATTCAGATTCTGATGATACGAAGGAGATTGAAAATGGTAGTTCCCACTGTTCATTAAATGCAAAATGGCCCTTTAATAGTGCTACTGACAGGTCAAATTCAACAGATTTTCTGCTTTATGAGGAGGAAGAAGATGAAAGGGAACAAGCAAATGAATTAAATGGTAGCCTGGAAAAAACCATCATACATTCTAAAAGCATGAGACGAAAAAGATTTGAAGAGGCATTGAAGAGATGGAAAGTAGAAAGTAATACGATGGAGGATGAAGCATTAGAAATAGAAAGCCAGTGTGCTAAGGAGATAAGTAGAAGAAAAGAAGTTGAAGAACAATTGTCAAGGGGAAAGCAAGAAGTACAGAAAATGAAGAATCAGCGCGATGAAATAATGTATGATCTGCAAATGGTTGAAGACCAAAATTCAGTTCTTAGGAACCAGTTAATTGAGTCCCAAAGATCGGCGGCAGAGTTGGAGGAGAAGATCATATCAGCTGTTGACCTTTTGATAAGTTTCAGGGAAAAACGAGATAAGCTAAGAATAGAACATGCAAAGGCAGTTAGGGAAGTCAAAATGCTCAGAAAAGTAGGAGAAGCAGATACTACATTCTCTTATGTTGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAACTAATGATTTTGACCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTTGTCAAATTCAACTGGAATTCCAACGTCAGGTAGAGGTTTTGAGTAGGGTAAGACATCGAAACCTGATAACACTAATTGGAAGCTGTGAAGAGTCTAGGTCACTCGTGTATGAGTACCTAAACAACGGCAGTCTCGAAAGCCACCTTGCCTGCAAAGACAAGACTCCACTTCCATGGCAAATTCGAATATCCATTGCTACTGACATATGCTCGGCTCTAATCTTTCTTCACTCCAGTGAGCCTTGTATTATCCATGGGAATTTGAAACCTAGCAAGGTCCTCCTCGACGCTAACTTTGTTGCGAAACTTGGTGATTTGGGTATTCCTAGTTTAGTCCGGCAAAGTGTGAATTCAGCTGACACATGCACAATATGCGACAATGCAGATAAAAGCTTGGCGTATGCGGATCCGGAGTATCTTGTCACTGGCAAACTTACACCAGAATCCGATGTGTATTCGTTCGGAATCATGTTGTTGCAGCTTCTAACTGGAAGACCACTTTCAGGGCTAGTTAGAGATGTGACATGTGCTTTGGAAAAAGAAAACCTTAAAGCAGTGTTGGACTTTTCAGCCGGTGAATGGCCGCTTTATCATACCAAACAGCTTGCATGTTTAGCATTAAGGTGTTGTGAAAAGGCTTGGTTTAAACGGCCGGACCTTGCATCAGAAATCTGGAGTGTTCTTGAACCATTCAGAACTACTTGCATCAACATGCCACTGAATTTGAATTCTAAGAAGCTTCAGCGCGCTCCTTCGCATTTTGTCTGCCCCATTGTCCAGGAAGTCATGGAAGATCCTTACATAGCTGCAGATGGCTTTACATATGAAGCAGAGGCAATACAAGGATGGTTGAACAGTGGTCATGACACTTCCCCCATGACAAACCTCAAGCTAGAACACACAGATTTGGTCCCTAATTATGCGTTACACAATGCCATTCAGGAGTGGCAGCAACAGTGA 2346 0.416 MMGSIEEDTVYVAVGKNVDKTRQLLHWASQNFSAKKICILHVHQTLADINLPGYEAKDHAIKAFQEHGIQTVHELLDQYITTLVPAGVQAYKLLIEKDDIEKGIIEAIAQHNIRWLVMGAAADKYKLGVWNCSKVAEQVSEKAIIVPEQSLSCNVLFIYKGNLISTRVDIKHTSEIETAPALLVLNSNTEIKQSENIKSESRSDALKYSDSDDTKEIENGSSHCSLNAKWPFNSATDRSNSTDFLLYEEEEDEREQANELNGSLEKTIIHSKSMRRKRFEEALKRWKVESNTMEDEALEIESQCAKEISRRKEVEEQLSRGKQEVQKMKNQRDEIMYDLQMVEDQNSVLRNQLIESQRSAAELEEKIISAVDLLISFREKRDKLRIEHAKAVREVKMLRKVGEADTTFSYVVEFPAFSFMEINEATNDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGCQIQLEFQRQVEVLSRVRHRNLITLIGSCEESRSLVYEYLNNGSLESHLACKDKTPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLGDLGIPSLVRQSVNSADTCTICDNADKSLAYADPEYLVTGKLTPESDVYSFGIMLLQLLTGRPLSGLVRDVTCALEKENLKAVLDFSAGEWPLYHTKQLACLALRCCEKAWFKRPDLASEIWSVLEPFRTTCINMPLNLNSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEAEAIQGWLNSGHDTSPMTNLKLEHTDLVPNYALHNAIQEWQQQ* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0647 781 ProSiteProfiles U-box domain profile. 711 781 IPR003613 GO:0004842|GO:0016567
Lja5g0647 781 Coils Coil 247 267 - -
Lja5g0647 781 Gene3D Phosphorylase Kinase; domain 1 399 501 - -
Lja5g0647 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 711 781 IPR013083 -
Lja5g0647 781 Coils Coil 311 366 - -
Lja5g0647 781 SUPERFAMILY RING/U-box 710 781 - -
Lja5g0647 781 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 120 - -
Lja5g0647 781 ProSiteProfiles Protein kinase domain profile. 429 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0647 781 ProSitePatterns Protein kinases ATP-binding region signature. 435 456 IPR017441 GO:0005524
Lja5g0647 781 Pfam U-box domain 712 780 IPR003613 GO:0004842|GO:0016567
Lja5g0647 781 CDD STK_N 9 161 - -
Lja5g0647 781 SUPERFAMILY Protein kinase-like (PK-like) 405 691 IPR011009 -
Lja5g0647 781 SMART Ubox_2 715 778 IPR003613 GO:0004842|GO:0016567
Lja5g0647 781 Gene3D HUPs 2 121 IPR014729 -
Lja5g0647 781 MobiDBLite consensus disorder prediction 194 220 - -
Lja5g0647 781 PANTHER OS02G0152300 PROTEIN 5 780 - -
Lja5g0647 781 MobiDBLite consensus disorder prediction 195 219 - -
Lja5g0647 781 Pfam Protein tyrosine and serine/threonine kinase 434 683 IPR001245 GO:0004672|GO:0006468
Lja5g0647 781 Gene3D Transferase(Phosphotransferase) domain 1 502 697 - -
Lja5g0647 781 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 5 780 - -
Lja5g0647 781 CDD RING-Ubox_WDSUB1_like 716 757 - -
Lja5g0647 781 Coils Coil 276 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0647 Lja-Chr5 5807648 5816617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0647 36 781 U-box Gene Family AT3G49060 44.015 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lja5g0647 PK_Tyr_Ser-Thr 2.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0647 - - aprc:113871315 1121.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0647 5 5807648 5816617 Lja5g0647 5 5807648 5816617 ECH