Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0643 ATGGCTCCTAAACAGCCTAGTACTGGCTTGTTCGTTGGTTTGAACAAGGGTCACGTTGTCACCAAGAAGGAATTGGCTCCACGCCCTTCAGATCGCAAAGGAAAAACCAGCAAGAGGGTGCACTTTGTGAGAAGCCTCATCCGTGAGGTTGCTGGGTTTGCTCCTTATGAGAAGCGTATCACTGAGTTGCTCAAGGTTGGAAAAGACAAGAGGGCACTCAAGGTTGCAAAGCGAAAGCTAGGAACCCACAAGCGTGCAAAGCGAAAGCGTGAGGAGATGTCCAATGTTCTCCGAAAGATGAGGTCTGGTGGTGGAGCTGGAGACAAGAAGAAATAA 336 0.494 MAPKQPSTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRSGGGAGDKKK* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0643 111 MobiDBLite consensus disorder prediction 87 111 - -
Lja5g0643 111 MobiDBLite consensus disorder prediction 79 111 - -
Lja5g0643 111 Gene3D 60S ribosomal protein L36 1 105 IPR038097 -
Lja5g0643 111 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Lja5g0643 111 PANTHER 60S RIBOSOMAL PROTEIN L36 1 110 IPR000509 GO:0003735|GO:0005840|GO:0006412
Lja5g0643 111 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Lja5g0643 111 PANTHER 60S RIBOSOMAL PROTEIN L36-1-RELATED 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0643 Lja-Chr5 5785893 5787686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0643 1 111 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 81.982 2.73e-59 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0643 K02920 - mnt:21389936 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2628 2 36264775 36266335 Lja5g0643 5 5785893 5787686 ECH
Lja5g0643 5 5785893 5787686 Lja5g0643 5 5785893 5787686 ECH