Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0641 ATGTCAGAATCTGATGAAGAAAAGCCAGACTTTCCACAAAAGGCTAGACCAACAGAGGAACCTGGATTTGCCATGGATTTTGATCTGGATTTGGAAAGTTCATGGCCTATGGATCACATGTCCTTTGTCTCCAACCCCATGTCACCTTTTCTGTTCTCCACCATGTCTGACCAACCTTGCTCTCCTCTCTGGGCTTTCTCTGATGGAGAAGATGATAGGCACACTAGCCTTGCAGCTCCAGCTTTCTCAGATTGCCACAAGATCTTTCCCTGTGATTCAAATTCAGTAACTGAGAAGCCAATGGAAAATGATGACAACAATAAGCTTTTGCCACCCGTTGTGCCTCAGCCACCTATAGAAAATTTGGATCGCTTTTGTGTAATCAAGGAAAGGATGACACAAGCGCTTCGCCACTTCAAAGAGTTGACTGAACTGAATGTTCTGGCTCAGGTTTGGGCACCTGTGAGGAATGGTAATCGGTATGTGCTTACAACTTCTGGTCAACCCTTTGTTCTTGACCCGCATAGTAATGGACTTCATCAGTATAGAACAGCCTCCCTGATGTACATGTTTTCTGCTGATGGAGAGAATGATGGAACTCTGGGACTTCCTGGTCGCGTTTTTCAGCATAAATTACCAGAGTGGACTCCCAATGTTCTGTACTATTCCAATAAAGAGTATCCACGACGTGATCATGCTGAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTGCATTGCAGTCATGTGTTGGTGTGCTGGAGTTGATAATGACTTCACAGAAGATTAACTATGGTCCTGAGGTTGAAAAAATCTGCAAAGCCCTTGAGGCAGTAAACTTGAAGAGTTCAGAAATTTTGGAGCCTCCATACACTCAGATTTGCAATGAAGGGCGTCAGAATGCGTTATCAGAGATTTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTGGCCCAAACATGGGTTCCCTGTCGGCACCGGAGCGTTTTGGCACACGGTGGTGGTTTAAAGAAAATTTGTTCTAGTTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTATAACTGATGTAGCGTCGTACATCATAGATCCTCATCTATGGGGCTTCCGCGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCTTTTTCGTCCCACAGCATGTGCTTCTGCCCAAACATTACCCAATTCTGCAAAACTGATTACCCCCTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGTTGTTTTGCAATCTGTTTACGGAGCTCTCATACAGGAGATGATGATTATGTGTTAGAATTTTTTCTGCCTCCTAGGATCACACACTTTAGTGAACAGAAGACACTTGTGGGATCCATATTGGCAACAATGAAACAGCACTTTCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTGAGGATGGTGGTTCAGTTGAAATTATTGAAGCAACAAATGAAAGAGTTACGTTGAGGCTTGAATCTATTCCAATTGCTCAATCTGTTCAATCACCACCTGGACCTGGTGGCTCGCCGAATATGGTGGAGGAAGTGCCAAAGGATCCATCAGAACAACAAACAATGATGAACTGCAATGACATGAATGAAGGAGGGGCTCATGGTGATAATGCAGGTGGAAACATTGATCAAATGTCCTCCTTAGAGACTAAAACCATGAAGAAACCCTCAGAAAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAACGTTATTTCGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCCACTACAATGAAGCGCATCTGTAGGCAGCACGGTATATCCCGCTGGCCATCTCGGAAGATCAACAAGGTTAACCGGTCCTTGTCCAAGCTCAAGCGTGTTATTGAATCCGTCCAAGGTGCTGAAGGAGCATTCGGTTTGAATTCTCTCAGCACAAGTCCACTTCCAGTTGTTGGTTCCTTTCCTGAGCCTTCTACTCCAAATAAGTTCAGCCAGCAAGCAAGCATGAGGCCATTAGAGTCTCAGATGAAAGAGAATGAAATTGATGCCTCTAAAATATTAGAAATTGAAGATCCATTGCTAGGAGGAATGACACAAAATCTTGAGAAAGTGTTTAATGATAAAGGTCCAAGAAGGATTAGAACTGGGAGTGGCTCTAGTGAAGATAGCACAAATCCTACTTCTCATGGTTCATGCTACGGTAGTCCCCCAATTGAAAGTTCACATGTAAAAGACATATCCATCACATCCAACAATGAGCGATGTGTTGTGCCGAGGGGATCACCGGAGTCGTCGCCGCTGCAGCCGATTAATACGTTGAACTCACCAAGTCCTATCCCTATACCTGACATTGTGTTAACAGAACTTCAAGAGCCATTTGGAGGAATGCTAATAGAGGATGCTGGAAGTTCTAAAGACTTGAGAAATTTGTGTCCTTCAGCAGCAGAGGCCATTTTGGAGGATCAGGTTCCAGAAGCTTGTCCAACTAATAATCCTCCAGGTTGTTCTAGTTTGGCTCCTAAGCGACCTGTGGATACACTTGGCAAAACAGTGACACCTTTCGCGGCTAAGAAAGAAATGAAAACAGTGACTATTAAGGCGACATACAGAGAAGACATCATAAGGTTTCGGGTCTCCTTGACATGTGGCATTGTGGAATTGAAAGAAGAAGTTTCCAAAAGGTTGAAACTAGAGGTGGGTACATTTGATATAAAGTACCTGGATGATGATCAAGAGTGGGTTTTGATAGCCTGTGATGCCGACCTGCAGGAGTGTATTGATGTTTCGAGATCATCAGCAAGCCACATAATCAGGGTTTTGGTGCATGATATCACTTCCAATCTGGGAAGCTCATGTGAGAGCTCAGGGGAGTGA 2931 0.4405 MSESDEEKPDFPQKARPTEEPGFAMDFDLDLESSWPMDHMSFVSNPMSPFLFSTMSDQPCSPLWAFSDGEDDRHTSLAAPAFSDCHKIFPCDSNSVTEKPMENDDNNKLLPPVVPQPPIENLDRFCVIKERMTQALRHFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTASLMYMFSADGENDGTLGLPGRVFQHKLPEWTPNVLYYSNKEYPRRDHAEHYNVRGTLALPVFEPALQSCVGVLELIMTSQKINYGPEVEKICKALEAVNLKSSEILEPPYTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKICSSFDGSCMGQVCMSITDVASYIIDPHLWGFREACVEHHLQQGQGVAGRAFSSHSMCFCPNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGDDDYVLEFFLPPRITHFSEQKTLVGSILATMKQHFQSLKIAAGVELEDGGSVEIIEATNERVTLRLESIPIAQSVQSPPGPGGSPNMVEEVPKDPSEQQTMMNCNDMNEGGAHGDNAGGNIDQMSSLETKTMKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSPLPVVGSFPEPSTPNKFSQQASMRPLESQMKENEIDASKILEIEDPLLGGMTQNLEKVFNDKGPRRIRTGSGSSEDSTNPTSHGSCYGSPPIESSHVKDISITSNNERCVVPRGSPESSPLQPINTLNSPSPIPIPDIVLTELQEPFGGMLIEDAGSSKDLRNLCPSAAEAILEDQVPEACPTNNPPGCSSLAPKRPVDTLGKTVTPFAAKKEMKTVTIKATYREDIIRFRVSLTCGIVELKEEVSKRLKLEVGTFDIKYLDDDQEWVLIACDADLQECIDVSRSSASHIIRVLVHDITSNLGSSCESSGE* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0641 976 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 975 - -
Lja5g0641 976 SMART PB1_new 881 963 IPR000270 GO:0005515
Lja5g0641 976 CDD PB1_NLP 882 962 IPR034891 -
Lja5g0641 976 MobiDBLite consensus disorder prediction 1 15 - -
Lja5g0641 976 PANTHER PROTEIN NLP8 3 975 IPR045012 GO:0003700
Lja5g0641 976 Pfam RWP-RK domain 588 636 IPR003035 -
Lja5g0641 976 MobiDBLite consensus disorder prediction 512 540 - -
Lja5g0641 976 MobiDBLite consensus disorder prediction 735 754 - -
Lja5g0641 976 Gene3D - 878 962 - -
Lja5g0641 976 MobiDBLite consensus disorder prediction 722 761 - -
Lja5g0641 976 SUPERFAMILY CAD & PB1 domains 879 966 - -
Lja5g0641 976 MobiDBLite consensus disorder prediction 1 22 - -
Lja5g0641 976 MobiDBLite consensus disorder prediction 773 794 - -
Lja5g0641 976 Pfam PB1 domain 881 962 IPR000270 GO:0005515
Lja5g0641 976 ProSiteProfiles PB1 domain profile. 881 963 IPR000270 GO:0005515
Lja5g0641 976 ProSiteProfiles RWP-RK domain profile. 575 656 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0641 Lja-Chr5 5770856 5775350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0641 262 976 NLP Transcription Factor Family AT4G24020 53.324 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja5g0641 PB1 8.6e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0641 - - gmx:100785821 1566.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2625 2 36032049 36038708 Lja5g0641 5 5770856 5775350 PCT