Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0638 ATGTCGGGAACTTCAATGGCTACTCCTCACGTTGCCGCTGTGGCCGGATTGCTTAAGTCCATTCATCCTGAGTGGAGTCCCGCTGCTATCAAGTCAGCACTTATGACTACTGCAACCACAAAAGATTATCGTGGAAATCCTATGCAGGAATCAGATTTTAAAAAATTGAAAGACGCAACTCCGTTTGCCTACGGTGCTGGCGTAATTCAACCTAATCTCGCCGTAGACCCTGATCTCATATATGAACTCGATATTAAAGATCACATGGACCATTTTTGGCATCGTGGCATCTACGACAAGGATGAATCTAAGTCGACGCTCAATATATTGAACTACAAGTACAACTATCCTTCAATTTCAATACCGAACCTTCAGTTTAATCATCCTCAAACTGCAACGCGCGTCTTGACAAATGTTGGTTCACCAGGAAAATATGAAGTGACAGTTGAAGCTCCCCCACAAGTTAGAGTTGAGGTTGATCCTACAGAACTAGAGTTTAAGGAGAAGGATCAAAAGGAGAAGTACAAAATTACATTCACTCTAGACTCTGAACCTAACGACACTAATGATTACGTGTTTGGGAGTTTAGTCTGGAAGGACGGAAAACACAATGTAAACTCCATTATATGTGTTAAGTTGGGTCGTACAAGTCCTAGTTCCACTCGGCCAAAAAAGATCATTGCCAAGTACAAGAGACATGCAGATTCTGATTGA 714 0.4202 MSGTSMATPHVAAVAGLLKSIHPEWSPAAIKSALMTTATTKDYRGNPMQESDFKKLKDATPFAYGAGVIQPNLAVDPDLIYELDIKDHMDHFWHRGIYDKDESKSTLNILNYKYNYPSISIPNLQFNHPQTATRVLTNVGSPGKYEVTVEAPPQVRVEVDPTELEFKEKDQKEKYKITFTLDSEPNDTNDYVFGSLVWKDGKHNVNSIICVKLGRTSPSSTRPKKIIAKYKRHADSD* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0638 237 PANTHER PEPTIDASE S8 1 212 - -
Lja5g0638 237 Gene3D - 89 213 - -
Lja5g0638 237 Pfam Fibronectin type-III domain 114 211 IPR041469 -
Lja5g0638 237 ProSitePatterns Serine proteases, subtilase family, serine active site. 3 13 IPR023828 -
Lja5g0638 237 SUPERFAMILY Subtilisin-like 1 76 IPR036852 GO:0004252|GO:0006508
Lja5g0638 237 Pfam Subtilase family 1 49 IPR000209 GO:0006508|GO:0008236
Lja5g0638 237 Gene3D Peptidase S8/S53 domain 1 87 IPR036852 GO:0004252|GO:0006508
Lja5g0638 237 ProSiteProfiles Serine proteases, subtilase domain profile. 1 75 - -
Lja5g0638 237 MobiDBLite consensus disorder prediction 216 237 - -
Lja5g0638 237 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0638 Lja-Chr5 5723301 5724316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0638 1 213 Subtilisin-like Serine Gene Family AT2G04160 44.144 5.75e-51 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0638 - - lja:Lj4g3v1388200.1 219.164