Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0620 ATGGCGTTGGGTGTCGCTGCTCTTCCGTTCACATTCGTCGTCCACGTTCTCGGTCTCGCCGCCGTCGTCTTAGTCTTGGTCTGGAACCTCTACTTCAGAGGTGGCTTAGCTTGGGATTCTGAAAACAAAGCCCTCATTTTCAATCTTCATCCTGTTCTTATGCTTATTGGCTTAATAGTTATTGGAGGTGAAGCCATTGTAAGTTACAAATCTCTTCCCTTGAAGAAGGAAGTGAAGAAGCTGATACACCTTACCCTCCATGCCATTGCATTAGTACTTGGAATAGTTGGAATTTGTGCTGCGTTCAAGAATCATAATGAAAGTGGGATTGCCAATCTGTACAGCTTGCATTCATGGCTTGGAATTGGGGTTATTTCCCTATATGGTGTTCAGTTCATATTTGGGTTTGTGACCTTTTTCTACCCTGGTGGGAGTCCAGCCATTAGACGTGACACACTCCCTTGGCATGTCCTGTTAGGGCTGTTTATATATATCTTGGCTATTGGCACTGCTTCACTTGGGTTTCTAGAGAAGCTCACATTCCTGGAGAGCTCAGGATTGGCAAAATATGGTTCTGAGGCCTTGCTTGTCAACTTCACTGCTATTATCACGATCTTATTTGGTACCTTTGTTGTGTTATCTGCTATATCTGAAGCTCGCGCAGCCACAGAAGATGAGTACACAGCCATATAG 693 0.4459 MALGVAALPFTFVVHVLGLAAVVLVLVWNLYFRGGLAWDSENKALIFNLHPVLMLIGLIVIGGEAIVSYKSLPLKKEVKKLIHLTLHAIALVLGIVGICAAFKNHNESGIANLYSLHSWLGIGVISLYGVQFIFGFVTFFYPGGSPAIRRDTLPWHVLLGLFIYILAIGTASLGFLEKLTFLESSGLAKYGSEALLVNFTAIITILFGTFVVLSAISEARAATEDEYTAI* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0620 230 CDD Cyt_b561_ACYB-1_like 40 183 - -
Lja5g0620 230 Pfam Eukaryotic cytochrome b561 49 181 IPR006593 -
Lja5g0620 230 PANTHER TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 1 1 227 - -
Lja5g0620 230 SMART 561_7 49 175 IPR006593 -
Lja5g0620 230 PANTHER CYTOCHROME B561-RELATED 1 227 IPR043205 GO:0016491
Lja5g0620 230 ProSiteProfiles Cytochrome b561 domain profile. 13 216 IPR006593 -
Lja5g0620 230 Gene3D - 2 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0620 Lja-Chr5 5562517 5565622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0620 1 218 Chloroplast and Mitochondria Gene Families AT4G25570 70.183 8.26e-111 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0620 K08360 - gmx:100306179 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0620 5 5562517 5565622 Lja5g0620 5 5562517 5565622 ECH