Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0618 ATGTATCCAGTCATCCTTTTAAGATTTAGTCACACTCTCTACATCTATTCTCCGAGATGTATTGTGCATAGATCAAATTCAAAATGGATTTCTATCAGGGGAAACAAAATGGGGTTCCAGCCACTAGAGAAGGCAAAACCAAAACACAGGAAAGGGTTATGGTCACCAGAAGAAGACCACAAACTTAGAAACTATATCCTTAAGCATGGTCATGGATGTTGGAGCTCTGTCCCCATTAATGCAGGGTTGCAAAGGAATGGAAAGAGTTGCAGACTGAGGTGGATCAACTATCTAAGGCCAGGATTGAAGAGAGGGAGGCTCAACAAACAGGAAGAGGAGACAATCACTACCCTTCATGACATGTTAGGCAACAAGTGGTCACAGATAGCACAACATTTACCAGGAAGGACAGACAATGAAATTAAAAACTACTGGCATTCATATTTGAAAAAGAGAGTGGCCAAAGCAAAGGAATTGGAATTTCATAAACAAATTCAACATGCTAGCTCAAGCTCAGATACCATGGATTCTTCACCCTCTGCTTCTCAAAGCTCCTTACCAAAACTGTTATTTGCTGAATGGCTTTCACTGGATCATGTACACAGTGGGAACTCTGCAAATTCAGTTGACTCTCTAGTCTTGAGAAATGGATTTGATCAAAATTCAACTTTTCAAGAAAAGGCAGTGTATGATAATATACAAGAGATGCCCTTTGGTGGAGAGTATCACAATACTCTGACTAACATTTCAGCCCCTGAGATATTCAATTCACAGCTAAAGTTTGCAAATCAAATGGTGGGAAATGGCTTCCTCCATTATATACCTGAGGTTGACTTTAGTAGCAATTTCAGCCTGAGCAATAATGCAATGTACGGGGTGAGTTGGTGGAAAATGGGTAAAGCACCTTGTTGTGAGAAACATGGAGTGAGAAGGGGTGCTTGGACTCCTGAAGAAGATGAAGCATTAGCTGACTACATCAAGAAGCATGGTCATGGAAGCTGGCGTTCACTTCCAAAACATGCAGGTCTCCTACGATGTGGAAAAAGTTGTCGACTTCGGTGGATAAACTATCTTCGCCCTGGCATCAAGCGTGGCCCATTTACTGATGAAGAAGAAAGTACTATTATTCAACTTCATGGCTTGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAACTACCAGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATATAAAGAAACGCTTCCTTCGGTCTGGTCATTCCCTAGGGGAAAAACAGCCATCTGTGATTCCTGATGGAAACAAGGTCCACTCTGAATCTCCTTCTACGCGCCATATGGTGCAATGGGAGAGTGCCAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAGTCTTCATTGCTCAATCCATGTTCAGCAGGGAAAACATGCCCTGATCACATCCTTCAACTTTGGCATTCTGAGGTTGGGCAGTCATTTCGCATGCTCAAGGGAAAGGAAGGATTAGTGTGTGAAATCCTTGTCTCACAAGCATCACGATCATCATCATCATCATCGAAATTGGAGTCATGTTCTGATGTCTCATTGCAAGGGAAAAGCACTGGAACCAGTAGCCACATAGCAAAGCTTGAAGATGTCAACATGATTCAAGAACAAGCAAGTAGCTACAAACCAAAGCTTGAAGATGATAAAGCTGTGTTAGAGTCGGGAAATTATGAATTTCTTGACACTTCTGATTCTGCACTAAAGCACCTGCTAGATATTCCTGATGGTGATATAGGATTCTTGGGACAAACAGACAATTTTCTGAATCTCCTTGATGGTATATACACCCCCAATATGTATAACTATTCACACATAATAGATTGA 1860 0.4199 MYPVILLRFSHTLYIYSPRCIVHRSNSKWISIRGNKMGFQPLEKAKPKHRKGLWSPEEDHKLRNYILKHGHGCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGRLNKQEEETITTLHDMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKRVAKAKELEFHKQIQHASSSSDTMDSSPSASQSSLPKLLFAEWLSLDHVHSGNSANSVDSLVLRNGFDQNSTFQEKAVYDNIQEMPFGGEYHNTLTNISAPEIFNSQLKFANQMVGNGFLHYIPEVDFSSNFSLSNNAMYGVSWWKMGKAPCCEKHGVRRGAWTPEEDEALADYIKKHGHGSWRSLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTDEEESTIIQLHGLLGNRWAAIASQLPGRTDNEIKNYWNTHIKKRFLRSGHSLGEKQPSVIPDGNKVHSESPSTRHMVQWESARVEAEARLSMESSLLNPCSAGKTCPDHILQLWHSEVGQSFRMLKGKEGLVCEILVSQASRSSSSSSKLESCSDVSLQGKSTGTSSHIAKLEDVNMIQEQASSYKPKLEDDKAVLESGNYEFLDTSDSALKHLLDIPDGDIGFLGQTDNFLNLLDGIYTPNMYNYSHIID* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0618 619 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 359 413 IPR017930 -
Lja5g0618 619 CDD SANT 313 358 IPR001005 -
Lja5g0618 619 Pfam Myb-like DNA-binding domain 311 358 IPR001005 -
Lja5g0618 619 Pfam Myb-like DNA-binding domain 108 149 IPR001005 -
Lja5g0618 619 Pfam Myb-like DNA-binding domain 364 408 IPR001005 -
Lja5g0618 619 Pfam Myb-like DNA-binding domain 51 98 IPR001005 -
Lja5g0618 619 SUPERFAMILY Homeodomain-like 308 405 IPR009057 -
Lja5g0618 619 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 102 IPR017930 -
Lja5g0618 619 CDD SANT 54 98 IPR001005 -
Lja5g0618 619 ProSiteProfiles Myb-like domain profile. 306 358 IPR001005 -
Lja5g0618 619 ProSiteProfiles Myb-like domain profile. 99 149 IPR001005 -
Lja5g0618 619 Gene3D - 311 363 - -
Lja5g0618 619 Gene3D - 51 103 - -
Lja5g0618 619 ProSiteProfiles Myb-like domain profile. 46 98 IPR001005 -
Lja5g0618 619 CDD SANT 366 409 IPR001005 -
Lja5g0618 619 Gene3D - 107 177 - -
Lja5g0618 619 CDD SANT 108 149 IPR001005 -
Lja5g0618 619 Gene3D - 366 412 - -
Lja5g0618 619 SMART sant 363 411 IPR001005 -
Lja5g0618 619 SMART sant 50 100 IPR001005 -
Lja5g0618 619 SMART sant 310 360 IPR001005 -
Lja5g0618 619 SMART sant 103 151 IPR001005 -
Lja5g0618 619 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 153 IPR017930 -
Lja5g0618 619 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 306 358 IPR017930 -
Lja5g0618 619 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 298 597 - -
Lja5g0618 619 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 37 182 - -
Lja5g0618 619 MobiDBLite consensus disorder prediction 420 444 - -
Lja5g0618 619 ProSiteProfiles Myb-like domain profile. 359 409 IPR001005 -
Lja5g0618 619 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 298 597 - -
Lja5g0618 619 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 37 182 - -
Lja5g0618 619 SUPERFAMILY Homeodomain-like 48 145 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0618 Lja-Chr5 5545746 5557175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0618 298 593 MYB Transcription Factor Family AT3G61250 52.805 1.32e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g0618 Myb_DNA-binding 9.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0618 K09422 - gmx:100782075 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2595 2 35191272 35194950 Lja5g0618 5 5545746 5557175 ECH
Lja5g0618 5 5545746 5557175 Lja5g0618 5 5545746 5557175 ECH