Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0604 ATGGAAATGAATCCTACTCACAACGGTGGTTTCAGCGAAGGAGAAAACGGCACAAACAGTGCCGATATATCTCCCTCGGAGACGACGGTGGCAATGGTGGAACCGCCGGAACAGCCGCCAGAAATGAAAGAAGAGCTCACGGAGACAGAGCATAGGCTGGTTGAGTCCTTTCCAACGGGTGTTATCACGGTGGCAGCCCCGGCGGCGAAGAAACCGTCGAAGGACCGTCACACGAAGGTGGAGGGACGTGGCCGGAGAATCCGAATGCCGGCGACGTGCGCCGCCAGAATCTTCCAGCTGACCCGGGAGCTAGGCCACAAGTCCGACGGTGAAACAATCCGGTGGCTGCTGGAGCAGGCGGAACCGTCGATCATAGAAGCCACCGGCACCGGGACAGTCCCGGCCATCGCTGTATCAGTCGGTGGAACACTGAAGATTCCAACATCTTCTCCGGCGAGGCCGGAGGGAGAAGACGACAACCCCAGGAAGCGAAGGAGGAGACCCTCCAACAGCGAGTTCATTGACATTAAGGATCAAGCTTCAGTCTGCTCAGGGCTCGCACCGATTGCACAGACCGCTTACGGTGGCGCTGGCGGTGGATTAGTCCCTATGTGGCCGGTGGCTAACGGTGGCGGCGGCGGCGGCGGGGGTAATCCAACAGGGCCTTACTTCATGTTCCCAAACACTGCAAACCAACCTCAGTATTGGGCCATACCCGCTAATACAGTGGGCCCGTTTTTCAATGTTGAAGGCAGACCCATTTCTGGTTTTGTTTCTGCTATGCAAATTGCTGAGGCTGCTTCTGCTAACTCCTCTTCTTCTACTTTTGCTCCTGCTTTGAGCTCACCTACTACTGCTACTACTAGCTCTGCTGTTACTACCTCTTCTTCATCCACTCAGATGCTCAGGGATTTCTCTTTGGAGATTTATGACAAGAGAGAGTTGCAGTTTTTGGGTGGCTCTTCTGCTCATTCTGAATCACCTTCAACTTCCAACCCTTGA 1002 0.5479 MEMNPTHNGGFSEGENGTNSADISPSETTVAMVEPPEQPPEMKEELTETEHRLVESFPTGVITVAAPAAKKPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEQAEPSIIEATGTGTVPAIAVSVGGTLKIPTSSPARPEGEDDNPRKRRRRPSNSEFIDIKDQASVCSGLAPIAQTAYGGAGGGLVPMWPVANGGGGGGGGNPTGPYFMFPNTANQPQYWAIPANTVGPFFNVEGRPISGFVSAMQIAEAASANSSSSTFAPALSSPTTATTSSAVTTSSSSTQMLRDFSLEIYDKRELQFLGGSSAHSESPSTSNP* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0604 333 Pfam TCP family transcription factor 73 143 IPR017887 -
Lja5g0604 333 MobiDBLite consensus disorder prediction 144 171 - -
Lja5g0604 333 MobiDBLite consensus disorder prediction 273 299 - -
Lja5g0604 333 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Lja5g0604 333 MobiDBLite consensus disorder prediction 1 27 - -
Lja5g0604 333 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 39 331 IPR005333 GO:0003700
Lja5g0604 333 MobiDBLite consensus disorder prediction 155 171 - -
Lja5g0604 333 MobiDBLite consensus disorder prediction 1 45 - -
Lja5g0604 333 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 39 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0604 Lja-Chr5 5403373 5404696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0604 67 318 TCP Transcription Factor Family AT5G51910 54.924 7.44e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja5g0604 TCP 2.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0604 - - cam:101514016 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0604 5 5403373 5404696 Lja5g0604 5 5403373 5404696 ECH