Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0597 ATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGGCAAGTAACATTCTCAAAGAGAAGGAGTGGTTTGCTGAAGAAAGCGTTTGAGCTATCTTTGCTATGCGATGCTGAAATCGCTCTCATCATCTTCTCTAGCCGTGGCAAGCTTTTCCAGTACAGCAGCACTGACATGTGTAGAATCATTGAGAAGTATCGTGAATCTTGCTTCAATAGTATGTCTCAGACTGGGGACTTGTCTGAACATCAATCTCAGAGGTTGTACCAGGAGCTTTCGGTATTAAGAGTCAAACACGAATCTCTAGAGCGAATGCAAAGGAATTTTCTGGGAGAAGAACTGGAGCCACTTAGCATGAAAGAATTGCAAAGCCTAGAGAAACAATTGGACAGAACACTTTCACAAGCTCGAAAGTACCAGACGCAAAAGTTAACGGCACGAGTTGATGAATTACGCCAAGAGGTGCATAACCTGGAGGAGGCTAACAAACAATTGAAATTCAAGGAAAAAGATATATGCACCAAGACTTGTGAGGGTTCTACAAATTCTACCTCATTCGTCTACAACAACCATGTTTTGCATGATGCAGAAACTGATCAATTTGAATCTGGGAAAACAAATCGATTTCGGCACTTGCAGCAAGGAGCTTCCAAAGGAAAAGCAATGGATACAAGTTAA 687 0.4207 MGRGKVVLERIQNKINRQVTFSKRRSGLLKKAFELSLLCDAEIALIIFSSRGKLFQYSSTDMCRIIEKYRESCFNSMSQTGDLSEHQSQRLYQELSVLRVKHESLERMQRNFLGEELEPLSMKELQSLEKQLDRTLSQARKYQTQKLTARVDELRQEVHNLEEANKQLKFKEKDICTKTCEGSTNSTSFVYNNHVLHDAETDQFESGKTNRFRHLQQGASKGKAMDTS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0597 228 Coils Coil 125 174 - -
Lja5g0597 228 PANTHER MADS BOX PROTEIN 1 227 - -
Lja5g0597 228 Gene3D - 13 74 IPR036879 GO:0003677|GO:0046983
Lja5g0597 228 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lja5g0597 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja5g0597 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja5g0597 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja5g0597 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja5g0597 228 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja5g0597 228 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja5g0597 228 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Lja5g0597 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja5g0597 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja5g0597 228 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 227 - -
Lja5g0597 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0597 Lja-Chr5 5361748 5363745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0597 1 171 MADS-box Gene Family AT2G45650 52.047 2.90e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja5g0597 K-box 6.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0597 K09264 - gmx:100802197 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0597 5 5361748 5363745 Lja5g0597 5 5361748 5363745 ECH