Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0592 ATGCATTTGAAATGTTTTTGTTGTTTTCAGAGTGAAGATGAGAAAACTCCACAAAGAAACAATGTCAACAACAAGGTAAATAGGGACTATCCATGGGAAATATACACCTTGAAGGAGTTGCTGCGCGCAACAAACAACTTTCATCAAGATAACAAGATTGGAGAAGGTGGATTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCGTTGAGATTGCGGTGAAGCGCTTGAAGACTATGACTGCTAAGGCAGAGATGGAGTTTGCAGTTGAGGTGGAAGTGCTTGGAAGAGTGAGGCATAAGAATTTGTTAGGATTGAGGGGATTCTATGCAGGAGGAGAAGAAAGGTTGATTGTGTATGATTACATGCCTAATCACAGCTTGCTTACCCATTTGCATGGTCAACTTGCTTCTGATTGTCTACTAGATTGGCCTAAAAGAATGAATATAGTAATTGGATCAGCTGAAGGGTTAGCGTATTTGCACCATGAGGCAAATCCTCACATCATTCACAGAGACATAAAAGCAAGCAATGTTCTTTTAGACAATGAATTTCAAGCCAAGGTTGCTGATTTTGGTTTTGCAAAGCTTATACCAGAGGGTGTGAGCCATCTCACCACAAGGGTTAAAGGCACACTCGGATACTTAGCCCCAGAATACGCGATGTGGGGCAAAGTTTCCGAGAGCTGTGATGTTTTTAGCTTTGGGATTCTGCTTTTGGAGATTGTGAGTGCAAAGAAACCAATTGAGAAACTCCCGGGAGGAATCAAAAGGGACATTGTTCAATGGGTCACGCCGTATTTCCACAAGGGCGTGTTCAAACACATTGCGGATCCAAAGCTGAAGGGGAATTTTGATTTGGAGGAGTTGATATCTGTGATCACGTTGGCTATGAGGTGCACGGATGGTAGCCCTGATAAGAGGCCTAGCATGGCTGAGGTGGTGGAATGGCTTAAGGGTGGTGGTGGTGGTGGTGGTGGGAAGAGAAAAAAAGAGATTCCCAATTTGAGTTACAAGAATGGTGACCAAGAAAATGAGGAAGATCATGAAGAGATTGAAACAATGCAGTCCAAGTGGAAAACACAAAGTGATAATGACAGGGTTAGAATAAGATAA 1116 0.4274 MHLKCFCCFQSEDEKTPQRNNVNNKVNRDYPWEIYTLKELLRATNNFHQDNKIGEGGFGSVYWGRTSKGVEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGEERLIVYDYMPNHSLLTHLHGQLASDCLLDWPKRMNIVIGSAEGLAYLHHEANPHIIHRDIKASNVLLDNEFQAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVFSFGILLLEIVSAKKPIEKLPGGIKRDIVQWVTPYFHKGVFKHIADPKLKGNFDLEELISVITLAMRCTDGSPDKRPSMAEVVEWLKGGGGGGGGKRKKEIPNLSYKNGDQENEEDHEEIETMQSKWKTQSDNDRVRIR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0592 371 SUPERFAMILY Protein kinase-like (PK-like) 30 320 IPR011009 -
Lja5g0592 371 Pfam Protein kinase domain 47 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0592 371 Gene3D Transferase(Phosphotransferase) domain 1 123 321 - -
Lja5g0592 371 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Lja5g0592 371 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0592 371 PANTHER - 1 358 - -
Lja5g0592 371 ProSiteProfiles Protein kinase domain profile. 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0592 371 Gene3D Phosphorylase Kinase; domain 1 8 122 - -
Lja5g0592 371 PANTHER OS01G0750732 PROTEIN 1 358 - -
Lja5g0592 371 MobiDBLite consensus disorder prediction 318 371 - -
Lja5g0592 371 MobiDBLite consensus disorder prediction 332 371 - -
Lja5g0592 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0592 Lja-Chr5 5288276 5290734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0592 26 353 Receptor kinase-like Gene Family AT5G45780 42.560 1.01e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Lja5g0592 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0592 - - gmx:100817283 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0592 5 5288276 5290734 Lja5g0592 5 5288276 5290734 ECH