Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0590 ATGGTGAAAACGAAGCCAGGCAAGTACGACGTGGACTCCTACACCATCAAAGACACCAACACGGTCGTCAGAGCCGGCGACTGCGTTCTGATACGGCTGCCCTCCGACACCTCGTCGTCGAGGCTTCTCCACTCCCTAGCCCGCGTGGAGAACATCGTGCAAGACAGCATGAACAGCGTCGGCGTACGCGTGCGGCGGTATTACCGACCCGAAGAGTCGATTGGGGGTCGCCGGAAGTTCCATGGCATCAAAGAGCTCTTCCTCTCTGACCAGTTCGATGTTCAGTGTGCTGACGCCATTGTAGGCAAGGTTGTTGTGCACTCTTTGAAGAACTATTCTAAGCTTGAGAATGTGGGTGCTGAGGATTACTTCTGTAGATTTGAATACAAGGCTACTACTGGGGTTTTTTCTCCTGATCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAATCCTGATGAACTCATGGTGCAATGTGAAGGGTGCAAGGATTGGTTTCATCCTGAATGTTTGGAAATGGCTGTGGAAGAAGCAAGGAGATTGGAACCTTTTATGTGTTCTGAATGTGGGTTGGAGAAAGAAATAAAGAGAAGTAGAAGGCAGTGGCATGTGCAAGAAGTGAGGGGGTGGGATTGA 639 0.4992 MVKTKPGKYDVDSYTIKDTNTVVRAGDCVLIRLPSDTSSSRLLHSLARVENIVQDSMNSVGVRVRRYYRPEESIGGRRKFHGIKELFLSDQFDVQCADAIVGKVVVHSLKNYSKLENVGAEDYFCRFEYKATTGVFSPDRVAVYCKCEMPYNPDELMVQCEGCKDWFHPECLEMAVEEARRLEPFMCSECGLEKEIKRSRRQWHVQEVRGWD* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0590 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 209 IPR013083 -
Lja5g0590 212 Pfam PHD-finger 144 190 IPR019787 -
Lja5g0590 212 ProSiteProfiles Zinc finger PHD-type profile. 142 193 IPR019787 -
Lja5g0590 212 SMART PHD_3 144 191 IPR001965 -
Lja5g0590 212 ProSitePatterns Zinc finger PHD-type signature. 145 190 IPR019786 -
Lja5g0590 212 PANTHER CHROMATIN REMODELING PROTEIN EBS 1 206 - -
Lja5g0590 212 PANTHER OS08G0421900 PROTEIN 1 206 - -
Lja5g0590 212 Gene3D - 2 136 IPR043151 -
Lja5g0590 212 Pfam BAH domain 23 139 IPR001025 GO:0003682
Lja5g0590 212 SMART BAH_4 21 140 IPR001025 GO:0003682
Lja5g0590 212 ProSiteProfiles BAH domain profile. 21 140 IPR001025 GO:0003682
Lja5g0590 212 SUPERFAMILY FYVE/PHD zinc finger 137 198 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0590 Lja-Chr5 5277754 5279630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0590 37 142 Core DNA Replication Machinery Family AT4G14700 30.909 8.87e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja5g0590 BAH 6.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0590 K25868 - atr:18423425 298.13