Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0589 ATGAACCCTTTCCACTCCATTGATGAACTGTACTTTTCATCTGCTAATTATTCCCTACCAATCCAAACAACCACACCACTAACACTAGATCAGATCTCGCCTGATCCTGTGATGGATATCAGTGATCTTCCTTGTGCAAAAGATCACAAGAGTTCCAATATTCATGAAATAAAGAAGTGGATGCATAGAGAGTCAGAAAAGCAAAGAAGGCAAGAAATATCAAAGCTTTGCGCCACCTTTAGATCCCATCTTCCCTTAGCATATATCAAGGGAAAGCGCGCTACATCTGATCACATACATGAGGGCACGAATTATATCAAACACCTTCAGAATAATGTGAAAAAGTTGCAAGACAAGAGGGATGAGTTAATGAAGTTGTCAAATTTTAATCATGTTGGCTCAGAGAGTGCAAACTTTGCCACCTATGTCATTGTTCATCCTTGTTTGGGAGGCATTCAGATTAAGTGCAGTTACAGCTTCAAGAAACATGCGTTTCCATTGTCAAGAGTGCTGGACATTGTCCTCAAAGAAGGGCTTAATGTGATCAATTGTATTTCCACCAGAACAGATGATCACAGGTTCATTCACACTATCCAATCAGAGGGTCCACACTTTTTGATGAATGAGACTAACTACACTGAACTGCAAAGCAAGCTAATCGCTGCGATATCATCTTCAACTATTGTAGGTCAAGAGGAGTTTGATGGAAGAGGAGTATCCTACATCAGATGA 732 0.4016 MNPFHSIDELYFSSANYSLPIQTTTPLTLDQISPDPVMDISDLPCAKDHKSSNIHEIKKWMHRESEKQRRQEISKLCATFRSHLPLAYIKGKRATSDHIHEGTNYIKHLQNNVKKLQDKRDELMKLSNFNHVGSESANFATYVIVHPCLGGIQIKCSYSFKKHAFPLSRVLDIVLKEGLNVINCISTRTDDHRFIHTIQSEGPHFLMNETNYTELQSKLIAAISSSTIVGQEEFDGRGVSYIR* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0589 243 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 49 230 IPR015660 GO:0003700|GO:0006357
Lja5g0589 243 Coils Coil 99 126 - -
Lja5g0589 243 Pfam Helix-loop-helix DNA-binding domain 59 110 IPR011598 GO:0046983
Lja5g0589 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 126 IPR036638 GO:0046983
Lja5g0589 243 PANTHER TRANSCRIPTION FACTOR 49 230 - -
Lja5g0589 243 CDD bHLH_AtORG2_like 58 128 - -
Lja5g0589 243 Gene3D - 49 133 IPR036638 GO:0046983
Lja5g0589 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 109 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0589 Lja-Chr5 5251051 5252761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0589 41 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 38.624 4.10e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g0589 HLH 5.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0589 - - lja:Lj5g3v2030790.2 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0589 5 5251051 5252761 Lja5g0589 5 5251051 5252761 ECH