Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0588 ATGGCGGAAGATAAGATTCAACGTATCATATCTTCAACTTCTGACAACGATGAAAAGAAGATCAATCGTAGGGAAGTTGAAAGACAAAGGAGGACCCAAATGTCGGTTCTATGTGCTTCTCTCCGCTCTTCACTCCCTCTTGAGCTCATCAAGGGAAAGCGTTCTGTATCAGATCTCATAGGGGAGGCTGTAAATCATGTCCAATTTCTGAAGCAAAAGATCAATGCACTTCAAATTAAGAGAGATGAACTCAAAGAGATGATGGTAAATTTAAGTTTTGTTAAAACTGAAACTGTTGGAGCAGATCATTCAAGTGCACTAGGGAAGTGTGTCAGCATCAATCTCATTCCAGGCGGTGTGGAAGTTGCAGTGTACGGTAGTGGTTTTGAAGAAAACAGTACACGTTTATCAGTTTTGATGCAAATATTGCTTCAAGAAGGATGTGATGTTGTTAGCTGTGTTTCTTCCTTAGTAAATGGGAGAATCTTTCATACTATCAAGTCTGAGGCTTCAACACAGATTGGATCAAGCAATCTTGTCAAGGTAACTATGCCGGTTGAGAGGACCATGTGGGATTTGTGA 582 0.4055 MAEDKIQRIISSTSDNDEKKINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVNHVQFLKQKINALQIKRDELKEMMVNLSFVKTETVGADHSSALGKCVSINLIPGGVEVAVYGSGFEENSTRLSVLMQILLQEGCDVVSCVSSLVNGRIFHTIKSEASTQIGSSNLVKVTMPVERTMWDL* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0588 193 Coils Coil 67 87 - -
Lja5g0588 193 SMART finulus 24 76 IPR011598 GO:0046983
Lja5g0588 193 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g0588 193 Pfam Helix-loop-helix DNA-binding domain 19 70 IPR011598 GO:0046983
Lja5g0588 193 Gene3D - 10 95 IPR036638 GO:0046983
Lja5g0588 193 CDD bHLH_AtORG2_like 19 85 - -
Lja5g0588 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 91 IPR036638 GO:0046983
Lja5g0588 193 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 172 IPR015660 GO:0003700|GO:0006357
Lja5g0588 193 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 12 172 - -
Lja5g0588 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 18 70 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0588 Lja-Chr5 5245636 5247359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0588 8 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 35.429 2.55e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g0588 HLH 6.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0588 - - gmx:100776724 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0588 5 5245636 5247359 Lja5g0588 5 5245636 5247359 ECH