Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0587 ATGTTTCCTTTACAACGAAGCAATAAGCTGGCGACCCCGTTTTCAAATAGTGTCCGCCACCGGCAACACAAAATCTCCGAAGATCAGATCCTCGATGATTGTGATTCCCTGGTTGTTGATTTCTCTGATAAAAAACTCTCTAGTGGCCGCACCAAGAGAATACTTTATCATAGTACTGCTGGTACGACTCATGCTAATAACTCTGAAGAATTTAAGAAGAAAAAGATGGTTCATAGAGAGATTGAGAAGCAAAGGAGGCAAGAAATGGCTACCCTTCATGCCTCTCTTAGATCCCTCCTCCCTCTCCACTTCATCAAGGGAAAGCGTTCTTTATCTGATCAGATGAATGAGGTAGTGAATTACATAAACCACCTGCAAAAGAACATAAAAGAGCTCAGTGACAAGAGGGATGAACTTAATAATCTCTCCAATATTCTCAAGAAGGACCATGCATCTGCTAGTTTCACTTTCCACCAGAGTGATGGATGTGTGGGAATTGAAATCACTAGTGGCTTCAGAGAGGAAGAAGGGTTACCAGTTTCGAAATTGCTGGAAATTTTGTTAGAAGAGGGGCTTGAAGTTGTTAGTTGCATTTCAACCAAAGTTAATGGAAAATTACTCCACAGTATGCAGTGTGAGGTTAACAGCAATTCCGAAAGTGTAGATCTAACTGAGCTGAGAAGGAAAATTTCCAATGTTATTCAATCATTTTCATGTTCTGATTAA 726 0.4022 MFPLQRSNKLATPFSNSVRHRQHKISEDQILDDCDSLVVDFSDKKLSSGRTKRILYHSTAGTTHANNSEEFKKKKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNIKELSDKRDELNNLSNILKKDHASASFTFHQSDGCVGIEITSGFREEEGLPVSKLLEILLEEGLEVVSCISTKVNGKLLHSMQCEVNSNSESVDLTELRRKISNVIQSFSCSD* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0587 241 CDD bHLH_AtORG2_like 74 139 - -
Lja5g0587 241 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 239 - -
Lja5g0587 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 239 IPR015660 GO:0003700|GO:0006357
Lja5g0587 241 Gene3D - 64 154 IPR036638 GO:0046983
Lja5g0587 241 Coils Coil 115 149 - -
Lja5g0587 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Lja5g0587 241 Pfam Helix-loop-helix DNA-binding domain 74 126 IPR011598 GO:0046983
Lja5g0587 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 143 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0587 Lja-Chr5 5237975 5239472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0587 59 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 46.739 5.07e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g0587 HLH 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0587 - - gmx:100775836 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0587 5 5237975 5239472 Lja5g0587 5 5237975 5239472 ECH