Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0582 ATGGAAGAGGAAGTGATTGTGAAGAAGGAGGATCCTAATGCGGTTTCTAAATTCAGGATATCCGGGCCGTTGAGGGAAATGTTGAAGGAGAAGGGGATTGTGTCGTTGTTTCCCATTCAGGCTATGACTTTTGACACCGTTCTTGATGGTTCTGATTTGGTTGGTCGGGCTCGCACTGGTCAGGGTAAAACTCTGGCCTTTGTGTTGCCCATATTGGAGTCTTTAACAAATGGTCCAACTAAAGCATCGAGAAAGACTGGCTATGGGAGGCCTCCGAGCGTTATTGTGCTTTTACCTACCAGGGAATTGGCTTGTCAGGTGCATGCTGACTTTGAAGTTTATGGTGGGGCAATGGGATTGACTTCTTGTTGTTTATATGGTGGGGCTCCATATCAAGGTCAAGAAATGAAGCTCAAGAGAGGTGTTGATGTTGTGATTGGCACACCAGGCCGCATAAAGGATCATATAGAGAGGGGGAATATTGACCTGAGCCAGCTAAAATTCCGCGTTCTTGATGAAGCAGATGAGATGTTGAGGATGGGTTTTGTTGAAGATGTTGAGCTGATTCTAGGTAAGGTAAAAAATGTTGGTCAAGTTCAGACACTTCTTTTTAGTGCTACTTTGCCAGACTGGGTTAAGCAGATTGCTGCAAAATTTTTGAAGCGAGATAAGAAAACTGCTGACCTTGTAGGAAATACAAAAATGAAGGCTAGCACAAGTGTTAGGCATATTGTTCTTCCTTGTACTAGTTCTGCCAGGTCCCAGCTTATCCCAGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTCAGCTTTCCCAGTTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAGGCACAACGTGAGGTTACATTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCTGCTCGAGGTCTGGATATTAATGATGTTCAGTTAATAATCCAGTGTGAACCTCCTCGGGATGTAGAAGCCTATATCCATCGTTCTGGTCGCACAGGAAGAGCAGGTAATACTGGAGTTGCTGTTATGCTTTATGATCCAAGAAGGTCAAGTATTTCTAAAATAGAAAGAGAATCGGGTGTAAAATTTGAACATGTGTCTGCTCCTCAACCTGATGACATTGCGAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTTTCGGATAGTGTGATTCCTGCATTCAAGTCTGCTGCTAAGGAGCTTTTGGACAACTCTGATTTATCAATAGTTGAACTACTTGCTAAGGCTCTTGCCAAGGCTGTTGGTTATACGGAGATAAAGAAAAGATCACTTCTCACTTCCATGGAAAACTATGTTACATTACTTCTTGAGAGTGGGAGACCTATCTTCACCCCATCTTTTGCGTACGGAATCTTGAGGAGATTCTTGCCTGAAGAGAAGGTTGAGGCTGTGCAAGGTCTTACTCTCACTGCAGATGGAAATGGTGTTGTTTTTGATGTACCAGCTGAAGATTTAAAGACATATATTGATGGTCAGGAAAATGCAGCGAATGTAAGTTTAGAGGTTTTAAAAGCATTGCCGCGTTTACAACAGAAAGATCAATCAAGAGGGGGCAGATTTGGAGATGGTGGTGGTCGTGGTGGTGATAGAAGTTGGGGGAACAGGTTTTCAGGTGGAAGAGGTGGTGGTGGCGGCAGGAATGACAGATTTTCCAATGGTGGTGGGAGAGGTCATAGCAACTCAAATGGAAAGAGATGGTGA 1797 0.4413 MEEEVIVKKEDPNAVSKFRISGPLREMLKEKGIVSLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASRKTGYGRPPSVIVLLPTRELACQVHADFEVYGGAMGLTSCCLYGGAPYQGQEMKLKRGVDVVIGTPGRIKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVKNVGQVQTLLFSATLPDWVKQIAAKFLKRDKKTADLVGNTKMKASTSVRHIVLPCTSSARSQLIPDIIRCYSSGGRTIIFTETKESASQLSQLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSSISKIERESGVKFEHVSAPQPDDIAKAVGGEAAEMITQVSDSVIPAFKSAAKELLDNSDLSIVELLAKALAKAVGYTEIKKRSLLTSMENYVTLLLESGRPIFTPSFAYGILRRFLPEEKVEAVQGLTLTADGNGVVFDVPAEDLKTYIDGQENAANVSLEVLKALPRLQQKDQSRGGRFGDGGGRGGDRSWGNRFSGGRGGGGGRNDRFSNGGGRGHSNSNGKRW* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0582 598 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Lja5g0582 598 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 2 576 - -
Lja5g0582 598 Pfam GUCT (NUC152) domain 447 542 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lja5g0582 598 CDD SF2_C_DEAD 241 367 - -
Lja5g0582 598 SUPERFAMILY RNA-binding domain, RBD 451 534 IPR035979 GO:0003676
Lja5g0582 598 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 44 226 IPR014001 -
Lja5g0582 598 Gene3D - 2 227 IPR027417 -
Lja5g0582 598 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 576 - -
Lja5g0582 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 370 IPR027417 -
Lja5g0582 598 Pfam Helicase conserved C-terminal domain 260 358 IPR001650 -
Lja5g0582 598 Gene3D - 239 464 IPR027417 -
Lja5g0582 598 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 255 397 IPR001650 -
Lja5g0582 598 Gene3D - 465 536 - -
Lja5g0582 598 MobiDBLite consensus disorder prediction 543 598 - -
Lja5g0582 598 CDD DEADc 24 222 - -
Lja5g0582 598 SMART helicmild6 277 358 IPR001650 -
Lja5g0582 598 Pfam DEAD/DEAH box helicase 37 214 IPR011545 GO:0003676|GO:0005524
Lja5g0582 598 CDD GUCT_RH7_like 454 539 - -
Lja5g0582 598 SMART ultradead3 32 244 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0582 Lja-Chr5 5196230 5200845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0582 39 364 Eukaryotic Initiation Factors Gene Family AT3G19760 30.303 4.24e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0582 K16911 - gmx:100820207 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0582 5 5196230 5200845 Lja5g0582 5 5196230 5200845 ECH