Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0579 ATGGAGGAAAATGAAGTTGGCTTGCTACTCTTGTTCTATGCTGGTGGACACCGGAAAATGAAGCTTCTGCTCTCTCCGGTTGCAACGGTTTTGCTCATGCTGTTGCTTTTCTCCCCCTTTGCTTCGTCACTAACTGAAGAAGGACAAGCATTAATGGCTATCAAGGCTTCCTTGAGCAACATAGCAGACGTGCTCCTTGATTGGGATGACGTGCACAATGACGATTTCTGCTCCTGGCGTGGAGTCTTCTGTGATAATGTCAGCCTTACTGTGCAATCTCTGAATCTTTCAAGCTTGAACCTGGGTGGGGAGATATCACCAGCTATTGGGGATTTAGTAAACTTGCAATCCATAGACCTGCAAGGGAATAAGCTAACTGGTCAAATCCCAGATGAAATTGGAAACTGTGCTGAGCTCATTCATTTGGATTTGTCTGATAATCAGTTATATGGTGATGTGCCCTTCTCCATATCCAAGCTTAAGCAACTTGAGTTTTTGAATTTAAAGAGTAATCAGTTGACTGGTCCTATCCCTTCAACTTTAACCCAAATTCCGAACCTGAAGACTCTGGATCTTGCTAAAAATAAGCTCACTGGAGAGATTCCTAGACTGCTCTATTGGAATGAAGTCTTGCAGTACCTAGGTTTGCGAGGGAACATGTTGACTGGAACTTTGTCGCCTGATATCTGTCAGCTAACTGGCTTGTGGTATTTTGACGTGAGAGGCAACAATTTGACAGGAACTATACCTGAAAGCATTGGAAACTGCACAAGTTTCGAAATCTTGGACATATCTTATAATCAGATTAGTGGGGAGATTCCCTATAACATTGGCTTTCTGCAAGTTGCTACCTTGTCACTTCAAGGAAATAGACTAACAGGGAAGATTCCAGAAGTGATTGGCTTAATGCAAGCCCTCGCAATTTTGGATTTGAGTGAGAATGAATTAGTGGGACCAATTCCTCCGATATTTGGCAATCTGTCCTTTACTGGAAAACTGTACTTACATGGAAACATGCTTACCGGTCCAATACCTCCGGAGCTTGGCAATATGTCCAAATTGAGCTACCTGCAATTGAATGACAATCAACTTGTGGGAAAAATTCCTGATGAAATTGGGAATCTTGAACATCTGTTTGAATTGAATCTTGCCAATAATCATCTTGATGGAACTATCCCGCATAATATAAGCTCCTGCACTGCCTTAAACCAGTTTAATGTGCATGGGAATCAGTTAAGCGGTTCTATTCCGTTGAGCTTTCGCAACCTTGAGAGTTTGACTTACTTGAATCTCTCTGCTAACAACTTCAAGGGGAATATACCAGTTGAGTTGGGACACATCATTAATCTTGACACGCTGGACTTATCTAGCAATAATTTTTCTGGGCATGTGCCAGCATCTGTTGGTTATCTAGAGCATCTTTTGACCCTGAACTTAAGTCATAACCATCTTGCTGGAACATTGCCTGCTGAATTAGGGAATCTCCGAAGCATACAAATTATTGACTTGTCATTCAACAACATGTCGGGTAGCATTCCTGTGGATTTTGGCCAGCTGCAAAACCTTGCGTCTCTGATATTGAACAACAATGATTTGCGTGGGAGGATTCCTGATCAGCTGACTAATTGTTTCAGTCTTTCCTCTCTAAACTTCTCTTATAATAACTTATCTGGAGCTATTCCATCTATGAAGAACTTCTCAAGGTTTTCAGCTGACAGCTTCATTGGAAATTCTTTACTATGTGGAGATTGGGTCGGATCAATATGTCATCCTTATACACCAAAAACAAGAGAGATTTTCTGCAGAGTAGCAGTTGTATGTCTCACTCTTGGCGTCTTACTGTTATTGGTGATGGTAATTGTTGCTATCTATAGATCCAGCCGATCGAAGCAGTTGATGAAAGGAACTGGCAGAACTGGGCAAGGGCCCCCCAAACTTGTCATTCTTCATATGGATTTGGCTATGCACACCTTGGATGATATGATGAGGAGCACTGAGAATCTCAGTGAGAAATATATCATAGGTTATGGTGCCACTAGCACTGTATACAAGTGTGCATTGAAAAATTCCCGACCAATTGCAATCAAGCGCTTGTTGTACAACCAGCATCATCCACACAGTTTGAGGGAATTTGAAACGGAACTTGAAACAATTGGCAGCATTAGGCATAGGAACCTTGTCACCTTGCATGGCTATGCCCTTACTCCCAACGGAAATCTCCTTTTCTATGACTATATGGCAAATGGCTCACTTTGGGATCTTCTACATGGTCCCTTGAAGGTAAAACTGGATTGGGAAACGCGGCTGAGGATTGCTGTAGGAGCTGCTGAAGGACTAGCTTATCTCCATCATGACTGCAACCCTCGAATTGTTCACAGGGATATAAAGTCTTCAAACATTTTGCTGGATGAGAACTTTGAGGCTCATGTCTCCGATTTCGGCACTGCCAAATGCATCGCTGCCACAAGAACTCATGCATCAACTTATGTTCTTGGAACCATAGGCTACATTGATCCTGAGTATGCACGGACATCTAGGCTGAATGAAAAATCAGATGTATATAGCTTTGGCATTGTTCTGCTAGAGCTACTTACTGGGAAGAAAGCAGTGGACAATGAGTCTAATTTGCATCAATGGATATTGGCCAAGGCAGATAACAACACTGTAATGGAAGCTGTGGATCCAGAAGTCTCCATTACCTGCATTGATCTGGCTCATGTTAAGAAGACTTTCCAGCTTGCTCTGCTCTGCACAAAAGGGAACCCTTCTGAGAGGCCTAGCATGCATGAAGTGGCCAGGGTACTGGTATCACTGCTTCCTTCACCTCCAAGTAAAGCTCTCACCGCACCTGCAAAGTCGTTTGACTATGTGCATTTTGTGATTGAGAAGGGTCAACAACAGAAAATGGAAGGACTGCAACAACCTAGGCAAGATCAAAATACTTCCAATGCTCAATGGTTTGTTCGGTTTGGGGATGTTATATCTAAGAGCACTCTTTGA 3000 0.4267 MEENEVGLLLLFYAGGHRKMKLLLSPVATVLLMLLLFSPFASSLTEEGQALMAIKASLSNIADVLLDWDDVHNDDFCSWRGVFCDNVSLTVQSLNLSSLNLGGEISPAIGDLVNLQSIDLQGNKLTGQIPDEIGNCAELIHLDLSDNQLYGDVPFSISKLKQLEFLNLKSNQLTGPIPSTLTQIPNLKTLDLAKNKLTGEIPRLLYWNEVLQYLGLRGNMLTGTLSPDICQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENELVGPIPPIFGNLSFTGKLYLHGNMLTGPIPPELGNMSKLSYLQLNDNQLVGKIPDEIGNLEHLFELNLANNHLDGTIPHNISSCTALNQFNVHGNQLSGSIPLSFRNLESLTYLNLSANNFKGNIPVELGHIINLDTLDLSSNNFSGHVPASVGYLEHLLTLNLSHNHLAGTLPAELGNLRSIQIIDLSFNNMSGSIPVDFGQLQNLASLILNNNDLRGRIPDQLTNCFSLSSLNFSYNNLSGAIPSMKNFSRFSADSFIGNSLLCGDWVGSICHPYTPKTREIFCRVAVVCLTLGVLLLLVMVIVAIYRSSRSKQLMKGTGRTGQGPPKLVILHMDLAMHTLDDMMRSTENLSEKYIIGYGATSTVYKCALKNSRPIAIKRLLYNQHHPHSLREFETELETIGSIRHRNLVTLHGYALTPNGNLLFYDYMANGSLWDLLHGPLKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHVSDFGTAKCIAATRTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQWILAKADNNTVMEAVDPEVSITCIDLAHVKKTFQLALLCTKGNPSERPSMHEVARVLVSLLPSPPSKALTAPAKSFDYVHFVIEKGQQQKMEGLQQPRQDQNTSNAQWFVRFGDVISKSTL* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0579 999 SUPERFAMILY Protein kinase-like (PK-like) 646 935 IPR011009 -
Lja5g0579 999 SMART LRR_typ_2 375 399 IPR003591 -
Lja5g0579 999 SMART LRR_typ_2 160 183 IPR003591 -
Lja5g0579 999 SMART LRR_typ_2 351 374 IPR003591 -
Lja5g0579 999 SMART LRR_typ_2 232 256 IPR003591 -
Lja5g0579 999 SMART LRR_typ_2 112 136 IPR003591 -
Lja5g0579 999 SMART LRR_typ_2 423 447 IPR003591 -
Lja5g0579 999 SMART LRR_typ_2 471 495 IPR003591 -
Lja5g0579 999 SMART LRR_typ_2 184 208 IPR003591 -
Lja5g0579 999 SMART LRR_typ_2 519 543 IPR003591 -
Lja5g0579 999 Gene3D Ribonuclease Inhibitor 209 320 IPR032675 -
Lja5g0579 999 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 35 972 - -
Lja5g0579 999 ProSitePatterns Protein kinases ATP-binding region signature. 674 696 IPR017441 GO:0005524
Lja5g0579 999 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 35 972 - -
Lja5g0579 999 Pfam Protein kinase domain 671 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0579 999 Gene3D Transferase(Phosphotransferase) domain 1 746 946 - -
Lja5g0579 999 ProSiteProfiles Leucine-rich repeat profile. 186 208 IPR001611 GO:0005515
Lja5g0579 999 Gene3D Phosphorylase Kinase; domain 1 638 745 - -
Lja5g0579 999 Gene3D Ribonuclease Inhibitor 321 592 IPR032675 -
Lja5g0579 999 Pfam Leucine rich repeat 449 507 IPR001611 GO:0005515
Lja5g0579 999 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515
Lja5g0579 999 Pfam Leucine Rich repeat 185 200 IPR001611 GO:0005515
Lja5g0579 999 Pfam Leucine Rich repeat 255 272 IPR001611 GO:0005515
Lja5g0579 999 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Lja5g0579 999 Gene3D Ribonuclease Inhibitor 44 208 IPR032675 -
Lja5g0579 999 SUPERFAMILY RNI-like 249 562 - -
Lja5g0579 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Lja5g0579 999 SMART serkin_6 668 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0579 999 SUPERFAMILY L domain-like 45 338 - -
Lja5g0579 999 ProSiteProfiles Protein kinase domain profile. 668 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0579 Lja-Chr5 5132106 5138773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0579 113 999 Receptor kinase-like Gene Family AT5G07180 75.901 0.0 1350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Lja5g0579 Pkinase 2.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0579 K20718 - gmx:100811653 1678.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0579 5 5132106 5138773 Lja5g0579 5 5132106 5138773 ECH