Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0577 ATGGCCTCAAAAACCGATGGCGAGAATTCAACCGATACCACTCCATCATTGCCAAAGAATATATACAAAGATCCAGATGATGGGCGACAACGGTTTTTGCTTGAATTGGAATTTGTTCAATGCCTTGCTAATCCTACCTATATCCATTATTTGGCTCAGAACCGATATTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGCCCTGAGTATATCAAATTTATTATGTATCCTCATTGCCTCTATTTTCTTGAGCGTCTTCAGAATGCAAATTTTCGCAGTGCAATGGCTCATCCTAATAATAAGGAGCTGGCACATAGACAACAATTTTATTTCTGGAAGAACTATAGGAACAATCGGCTAAAACACATTTTACCAAGATCACTTCCTGAACCTAGTGCAACTCCTGCACTTCCTGCTCCTGCGTCAACACCAATACAGCCACCTGTGCCTGCACTGCCACCAGCACCTGCGACCAATGTTGCCGTGACAGCATCATCTGCTCAAGCTCCTTCTCCCATGCCATATGGTATACCTCCTGGCTCTGGTCTTGCTAAAAGTGACATGAGGAATCCTACAGTTGATAGAAGGAGGAGAAAGTGA 621 0.4267 MASKTDGENSTDTTPSLPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLERLQNANFRSAMAHPNNKELAHRQQFYFWKNYRNNRLKHILPRSLPEPSATPALPAPASTPIQPPVPALPPAPATNVAVTASSAQAPSPMPYGIPPGSGLAKSDMRNPTVDRRRRK* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0577 206 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 9 206 IPR008831 GO:0003712|GO:0006355|GO:0016592
Lja5g0577 206 Pfam SOH1 30 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Lja5g0577 206 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 9 206 - -
Lja5g0577 206 MobiDBLite consensus disorder prediction 134 206 - -
Lja5g0577 206 MobiDBLite consensus disorder prediction 138 162 - -
Lja5g0577 206 MobiDBLite consensus disorder prediction 1 23 - -
Lja5g0577 206 MobiDBLite consensus disorder prediction 1 18 - -
Lja5g0577 206 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 18 119 IPR038089 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Lja5g0577 Med31 6.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0577 K15153 - gmx:100527879 342.813