Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0573 ATGAGAGTGCCGACCGGAATTTCTCCCCAGGGACATAAAAGACTGAAACTATCTAGTGATAGTCTGCCATACTCAGCACATGATAAATCTGTACCAGAGGCACCTGCAAATGTTGAAGACTTCAGCAATCCATTTGCGATCTCTGATTTTTTAAATCGTTTAGAAATTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGCCCTTATAACCCGAAAAATGCAAGTACTGGGCCCTTTCTTTGCAAAGTTTCCTAAACTTGTTACTCAATCATTAAAAGTGGTTGTGAACCACGATGAAGAAAGTAATAAGTTGGAAAATAAAAAAGGCACCATCATGTCACATGATAAAGTAATAGATTTGGAAGAGGAGCGCACTAAAAAGGATGCTTCTTCAGCACAGGCTGTTGTGATTATTGATTCGGATGAGGAAGATGATAGGGACAAAAATTCTTCTCTTCCATTTAATGAAGTTATGTTTCCGAACTCACTCCAATCTCCTGCATTGAGGATGATGGGGTATCGTGCTCCCATTGCTTACCATGGAGAAAGTGAAGATCTCAAATTTGAGCCAACTCGAGCTGCTAAAGATAAGACTCAGAGAGATAAAGGTGTTTATGTTGGTGTACAGGAGGAAGATGAGGTTGATACTGAAGATGATGGACTTGATGATATTTGGAGGGAAATGTCAATGGCCGTAGAATGTTCGAAGGATGCTTCTGTGAATCCTCCACCTGAGGAAGAAGTTGAAAAAGAAGACGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGTGTTTGTGGTGTCATTGACCGAGGAATTGAAACCATATTTGAGTTCCAGTACAAGGTTAAAAGGAGCACAAGAACTTACATGGCTGATTCATGGAATGCCAAAGCAAAAGTTGATGTATATGGAGTTAATATTGCCGAAGATGACATCATGTTTACTGAAATTTCAGCACATCCTAGGCATATGAAGCAAATGAAGTCTCATAAAATTGAAGGGTTCAATTTTCTCGTCAGAAACCTCGTAGGTGACAATCCTGGGGGCTGCATCTTGGCCCATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAGAGTTTTCTAGGAAAGTACCCAAATGCTAGACCTCTGGTGGTGCTTCCCAAGGGAATACTATCTACTTGGAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTTACGATTTTTACACTGTGAAGGCAGACAGTAGATCACAGCAGTTGGAAGTTTTGAAACAATGGGTGGAATGCAAGAGCATCCTTTTCTTGGGCTACAAGCAGTTCTCTTCAATTGTCTGTGATAATAGTACTAACAGCATATCAATATCTTGCCAAGATATATTGCTTAAGGTACCTTCAATTCTCATTTTAGATGAAGGACATAATCCGCGGAATGAGAATACCGATATGGTGCAATCCCTTGCAAAGGTAAAAACACCTAGAAAAGTTGTACTGTCAGGTACCTTGTATCAAAACCATGTGAAGGAGGTATTTAATATTTTGAATCTGGTTCGGCCAAAGTTTCTTAGGATGGAAACATCTAGGCCTATTGTCAAGCGCATTCACAGTAGAGTACATATATCGGGCAAGAAATCTTTCTATGATTTGGTGGAGGACACTTTGCAGAAGGACCCAGATTTCAAAAGGAAAATAGCTGTTGTTCAAGATTTGCGTGAGATGACGAGTAAGGTACTTCACTATTACAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTGGTTGATTTTACTGTGTTGCTTAAGCTGACCCCAAGACAGAAGCATGAAACTGGGAAATTAAAGAATATATCTAGAAAGTTCAAGGTATCTTCTATGGGCAGTGCGCTGTATCTTCACCCTAGATTGATACCTGTTGCGGATAAATGTGGTGAAAACTCTGTATCTGACCAAATGGTGGATGATTTAATAGAGAAGTTGGATGTGAAAGATGGAGTGAAGTCGAAATTCTTTATGAACATTCTAAACTTGTGTGAATCATCCAACGAGAAGCTTCTAGTGTTCAGCCAATATCTCTTACCTTTGAAATATTTAGAGAGGTTAGTTATGAAATGGAAAGGTTGGAGTTTTGGGAAAGAAATCTTCGGAATCTCAGGGGAATCTAGCTCTGAGCAAAGGGAGTGGTCCATGAACAAATTCAACAATTCGCCTGATGCTAAAATCTTCTTTGGCTCAATCAAGGCTTGTGGAGAGGGCATATCATTGGTTGGGGCATCCCGAGTACTCATTTTGGATGTTCATCTGAACCCATCAGTTACTCGTCAAGCTATTGGTCGTGCATTCCGACCAGGACAGACAAAGAAGGTCTTTGTGTATCGATTGATAGCTGCTGATTCTCCGGAAGAGGACGATCACATTACTTGTTTCAAGAAGGAATTGATTTCAAAGATGTGGTTTGAGTGGAATGAGTACTGTGGTGATAGAGCCTTCCAAGTTGAGACCGTTAGTGTCAATGAATGTGGTGATGAGTTCCTTGAGACTCCAATGTTAGGAGAAGATGTAAAAGCTTTGTATAAAAGATAA 2598 0.4007 MRVPTGISPQGHKRLKLSSDSLPYSAHDKSVPEAPANVEDFSNPFAISDFLNRLEIGKFGSVTKDIEALITRKMQVLGPFFAKFPKLVTQSLKVVVNHDEESNKLENKKGTIMSHDKVIDLEEERTKKDASSAQAVVIIDSDEEDDRDKNSSLPFNEVMFPNSLQSPALRMMGYRAPIAYHGESEDLKFEPTRAAKDKTQRDKGVYVGVQEEDEVDTEDDGLDDIWREMSMAVECSKDASVNPPPEEEVEKEDDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMADSWNAKAKVDVYGVNIAEDDIMFTEISAHPRHMKQMKSHKIEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVECKSILFLGYKQFSSIVCDNSTNSISISCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLRMETSRPIVKRIHSRVHISGKKSFYDLVEDTLQKDPDFKRKIAVVQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLKLTPRQKHETGKLKNISRKFKVSSMGSALYLHPRLIPVADKCGENSVSDQMVDDLIEKLDVKDGVKSKFFMNILNLCESSNEKLLVFSQYLLPLKYLERLVMKWKGWSFGKEIFGISGESSSEQREWSMNKFNNSPDAKIFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLIAADSPEEDDHITCFKKELISKMWFEWNEYCGDRAFQVETVSVNECGDEFLETPMLGEDVKALYKR* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0573 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 529 IPR027417 -
Lja5g0573 865 Gene3D - 597 847 IPR027417 -
Lja5g0573 865 SMART ultradead3 330 544 IPR014001 -
Lja5g0573 865 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 8 865 IPR044567 GO:0080188
Lja5g0573 865 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 348 527 IPR014001 -
Lja5g0573 865 PANTHER PROTEIN CHROMATIN REMODELING 35 8 865 - -
Lja5g0573 865 MobiDBLite consensus disorder prediction 132 154 - -
Lja5g0573 865 Gene3D - 303 557 IPR038718 -
Lja5g0573 865 Pfam Helicase conserved C-terminal domain 678 788 IPR001650 -
Lja5g0573 865 Pfam SNF2-related domain 354 581 IPR000330 GO:0005524|GO:0140658
Lja5g0573 865 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 657 841 IPR001650 -
Lja5g0573 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 827 IPR027417 -
Lja5g0573 865 MobiDBLite consensus disorder prediction 1 32 - -
Lja5g0573 865 SMART helicmild6 704 789 IPR001650 -
Lja5g0573 865 CDD SF2_C_SNF 663 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0573 Lja-Chr5 5064219 5071119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0573 686 807 RAD5 or RAD16-like Gene Family AT5G43530 37.705 3.79e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja5g0573 SNF2_N 5.8e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0573 K10875 - gmx:100780454 1349.73