Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0571 ATGCCATTGAGGCAGATGAAAGAAGGGTCTGAGCAACACCTAGTGATCAAACCCCATTTGCAGAACCAGAACCCCATGTGTACTCCAGCTAAGAAGGTACCGAAAGCTACTACCCAAAATGGCCAAGGTCCATCACCACCTCAAGAAAACCATAGCCAAACTTCACCTCACCCAAGGAACAAGGGAAGGAGAAGGGGCAGAGGAGGCAGAAAATGTGATCAAGGTGATGTTTTGATGAGGCCTAGTTGCAGGCCTTGCACTGCAACAAGTTCTTCTGCAAATGGAAATGTTCAAAATGGCTACACCTCTGGGAATGTAGATATGGGTTTTCCTACTTCAAGCAAGTCTTTAAGCTTTGCTCGTAGACCTGGATTTGGACAAGTTGGGACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATGTTACTATTACCCCGGAAGTGTCTTCAAGAGCAGTAAATAGGTCCATTATAGCTGAACTTGTGAGGCTGTATAAAGAGTCTGACTTAGGGATGAGACTTCCTGCATATGATGGCAGGAAAAGTCTGTACACTGCAGGGCAGCTTCCATTTGCTTGGAGAGAATTTAAGATTAAGCTTGTAGATGAACAAGATAGAGTAAATGTCCCCAAAAGGGAAAGAGAGTACAATGTGGTGATAAAGTTTGTTGCTCGGGCAAACTTGCATCACTTAGGTCAGTTTCTAGCTGGTAAGCGTGCTGATGCACCGCAGGAGGCACTTCAAATTCTTGACATTGTTCTGAGAGAGCTGTCGAATAAGAGGTATTGTCCCATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACACCACAACGGCTTGGAGAGGGATTGGAGTCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCATCTGCTGCATTCATTGAACCTCTTCCAGTAGTAGAGTTTGTTGGCCAACTATTAGCAAAAGATGTGTTGTCAAGGCCGTTGTCAGATGCTGATCGCATTAAGATTAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTGAGAAGAAAATATCGTGTTTCTGGGTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAACTCAACTATGAAGTCAGTTGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTCAATATGCTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCTAACTATTTACCTATGGAGGCCTGCAAAATTGTTGAGGGGCAACGCTATACAAAGAGATTGAATGAGAAGCAAATTACTTCTCTGTTGAAAGTTACTTGCCAGAGACCTCGTGATCGGGAAAATGACATTTTACAGACCGTTCAACATAATGCTTATGACCAAGATCCTTATGCAAAGGAATTTGGATTGAATATCAGTGAAAAGCTAGCTTCTGTCGAAGCACGGATTCTTCCTGCCCCATGGCTTAAATATCATGAAAGTGGGAAAGAGAAGAACTGTTTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAACCGGTGGGCATGCATAAATTTTTCACGGAGCGTGCAAGATAGTGTTGCTCGCACTTTCTGTAATGAGCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAACCCAGAGCCTGTTATTCCCATCTACAATGCCAAGCCTGAGCAGGTGGTGAAAGCTTTGAAGCATGTTTACCATGTTTCGTCAAACAAAACTAAAGGAAAGGAATTGGAGCTGTTGTTAGCAATATTACCAGACAATAATGGGTCTCTCTATGGTGATCTCAAGCGTATATGTGAAACTGACCTGGGTTTAATTTCACAATGCTGTCTGACAAAGCATGTCTTTAAAATCACTAAACAGTACTTGGCTAATGTGTCTCTGAAGATCAACGTTAAGATGGGAGGTAGAAACACTGTTCTTCTTGATGCTTTGAGCTGCAGGATACCATTGGTTAGTGACATACCAACCATAATTTTTGGAGCAGATGTCACCCACCCTGAAAATGGAGAAGACTCTAGCCCCTCAATTGCAGCTGTTGTAGCATCCCAGGACTGGCCTGAAGTGACGAAATATGCTGGTTTAGTGTGTGCTCAAGCTCATAGACAAGAACTTATACAAGATTTGTACAAAACTTGGCAGGACCCTGTTCGCGGCACAGTTAGTGGTGGCATGATAAGAGACTTACTGGTTTCCTTTAGAAAGGCGACAGGACAAAAGCCACTACGAATTATATTTTACAGGGATGGTGTAAGCGAGGGGCAATTTTACCAAGTATTACTTTATGAGTTGGACGCAATCCGGAAGGCATGTGCGTCCTTGGAGCCAAACTATCAGCCTCCGGTAACTTTCATAGTTGTACAAAAAAGACACCATACTCGGTTATTCCCAAACAACCACAAGGACAGGAGCAGTACAGATAAGAGTGGGAACATAATGCCTGGGACTGTTGTTGATTCTAAAATCTGCCATCCAACGGAATTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGTACTAGTCGACCTGCTCATTATCATGTTCTATGGGACGAAAACAACTTCACAGCAGATGGAATTCAGTCTTTGACCAACAATCTTTGTTATACATATGCGAGGTGTACACGCTCCGTGTCCGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCTTTTCGAGCCCGTTTCTATATGGAACCAGATATGCAAGAGAATGGCTCTTCAGGTGACGGTAACACTAGTAACAGCTCCAAGGGGACACGAGTAGCTGGAGAGTGTGGTGTTAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTGATGTTTTACTGTTAG 2949 0.43 MPLRQMKEGSEQHLVIKPHLQNQNPMCTPAKKVPKATTQNGQGPSPPQENHSQTSPHPRNKGRRRGRGGRKCDQGDVLMRPSCRPCTATSSSANGNVQNGYTSGNVDMGFPTSSKSLSFARRPGFGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSRAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFAWREFKIKLVDEQDRVNVPKREREYNVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSNKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLAKDVLSRPLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYAHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILQTVQHNAYDQDPYAKEFGLNISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVVKALKHVYHVSSNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDALSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFPNNHKDRSSTDKSGNIMPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSSGDGNTSNSSKGTRVAGECGVKPLPALKENVKRVMFYC* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0571 982 ProSiteProfiles Piwi domain profile. 615 936 IPR003165 GO:0003676
Lja5g0571 982 SUPERFAMILY Ribonuclease H-like 607 937 IPR012337 -
Lja5g0571 982 CDD Piwi_ago-like 485 935 IPR045246 -
Lja5g0571 982 Pfam N-terminal domain of argonaute 131 265 IPR032474 -
Lja5g0571 982 MobiDBLite consensus disorder prediction 940 960 - -
Lja5g0571 982 Pfam Mid domain of argonaute 524 601 IPR032473 -
Lja5g0571 982 MobiDBLite consensus disorder prediction 16 55 - -
Lja5g0571 982 Pfam Piwi domain 616 935 IPR003165 GO:0003676
Lja5g0571 982 Pfam PAZ domain 353 457 IPR003100 GO:0005515
Lja5g0571 982 Gene3D paz domain 320 445 - -
Lja5g0571 982 SMART PAZ_2_a_3 331 463 IPR003100 GO:0005515
Lja5g0571 982 Pfam Argonaute linker 2 domain 467 513 IPR032472 -
Lja5g0571 982 Pfam Argonaute linker 1 domain 275 324 IPR014811 -
Lja5g0571 982 MobiDBLite consensus disorder prediction 942 958 - -
Lja5g0571 982 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 60 981 - -
Lja5g0571 982 Gene3D - 505 678 - -
Lja5g0571 982 SMART DUF1785_2 274 326 IPR014811 -
Lja5g0571 982 SUPERFAMILY PAZ domain 321 481 IPR036085 GO:0005515
Lja5g0571 982 Gene3D - 684 982 IPR036397 GO:0003676
Lja5g0571 982 ProSiteProfiles PAZ domain profile. 327 441 IPR003100 GO:0005515
Lja5g0571 982 CDD PAZ_argonaute_like 326 440 - -
Lja5g0571 982 MobiDBLite consensus disorder prediction 1 91 - -
Lja5g0571 982 SMART Piwi_a_2 615 936 IPR003165 GO:0003676
Lja5g0571 982 PANTHER PROTEIN ARGONAUTE 10 60 981 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0571 Lja-Chr5 5036900 5043425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0571 1 982 Eukaryotic Initiation Factors Gene Family AT5G43810 81.426 0.0 1654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0571 K11593 - gmx:100816999 1818.13