Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0570 ATGCAAATTCTTTACTCCGATGAAGCGCCCACCGCCGGAGGCGACTTTCCCGAAAATCCCGAAGACAACAAGAAGAACTCGACCTCCGGCGATTCTTCAGACTCCGGAATCGATGAACCCGTTTCCCTCGATGTATCAGGGAGGAGCTTGGAGTTTCCGGTGCCGGAGAATGCCAAAGAAGACTCCGTCGAGAGCCTGTACATGTACAGGAACGTTTACAGCTTGATTCCCAAGTCCGTCGGCGCTCTTGTGCGTTTGAGAACGCTGAAATTCTTCGGGAACGAGATTAACTTGTTCGCGCCGGAGTTTGGGAACATGACGGCGCTGGAGCGGTTGCAGATGAAGATTTCTTCACCTGGGATTGGTGGGTTGCCCTTGCATAAGCTCAAGGGTTTGAAGGAGCTTGAGCTTTCTAAAGGGCCTCCAAGACCTTCAGCTTTTCCTATTTTGACTGAGATTGCTGCTCTCAAATGCTTGACCAAGCTTTCCATTTGTCACTTCTCCATAAGATACCTTCCTCCGGAAATTGGTTGCTTAAAGAGTCTGGAGTATCTTGATCTTTCATTCAATAAAATCAAGACATTGCCCACAGAGATTACTTATTTGATTGGCTTAATATCCATGAAAGTTGCAAACAATAAGTTGGTGGAGCTACCATCAGCTATGACCTCTCTGTCAAGGTTGGAGTGTTTGGACCTGTCAAATAATAGATTGACTTCACTAGGATCCCTTGAACTCGCGTCAATGCACAGGCTTCAGAACTTAAATCTTCAGTACAACAAGCTGCCCAGCATTTTTCACATTCCTTCATGGATATGCTGTAATATGGAAGGAAATGACAGAGGTAGATGCAAAGATGATTGTAGCAGTTGTTCTGTTGAAATGGATGTCTATGAAAGCGAAGTACTGGAAAATAAAGAAACCCTTTCTCATGGTCCTCATAACACCTCATCAAGTATATTAACAAGCTCCTCATCTAGCAGTAGATGTTTTGCAACTCGTAAGTCAGGTAAACGGTGGAAGCGGCGACACTATTTGCAGCAGAAAGCTCGTCTAGAACGCTTAAATAGCAGCAGGAAGTGGAAAGGTGTAGATCTTGACCGGTTGCCTAGCAAGAAGATTCACAAAACTTCTGAACCAGAAAATATGAATAGTCTTGCCTCTGAAAACTGCGCAGAAACTGTATCAGACAATGGGAGCTTGGATGGCAGTAATAGAAGATCATTCTCTGAAGAAGTGAATGACAATTTGATTGATAATGTCAACACTGATGAAGTAATTATTGAAAAGCAGTTTTCACAAGATGATTTCTGCACTTCTGAAAGCAGAGATGAAAAAGATGCATCCATATGCTCCTTAGAGAATGGGCAAAGTGAACAGGATGAAGCATGTTTAGATTCTTTGAAGTGTATTTCTAAATCAAAGAGGCATTCAGTTCAGGATATTGATAATCCTAAACCATGCAAGTCTAGAAAACCAATTGGCGATAGCTCATTAGTTTCTTGCAAGTACAGCAAGATATCATTTTGTGGCATTGAAGACCATCTGTCAGATGGCTTTTATGATGCAGGACGTGATCGGCCATTTATGCCTCTTGAGAGTTATGAGCAAAATCCGTGCCTTGCATCTCGTGAAGTCATACTTTTAGACAGAAGAAGGGATGAAGAGTTGGATGCTGTTATGCTCTCTGCTCGGACTTTGGTCTATAATTTGAAGCAGTTAAGTAGTATAAACTTTCCTGGGAGCCTGGCTGTGGTTGATAACTTGCAAACAGCGTCACTGCTTGCCCTATTTGTATCTGATCACTTTGGTGGAAGTGATAGACGTGCTATTATAGAAAGGATGCGGAAATCTGTATCTGGTTCAAATTATAATAAGCCTTTTGTCTGTACGTGCTCAACTGGAAGCAGCACCAGTATAAGTGCTTCCCCTGGACCAGTTGTAAACACCATGGAAGATATTGCTCTTTCCGAGATCTCTGGAAAATCTCTTGATTATATAAAAAAAAGGCGAAATTCAATCATAGTTCCTATTGGCTGTGTGCAGTATGGTGTATGTAGACATAGAGCTCTGCTTTTTAAGTATTTATGTGATCACATGGAGCCACCTGTACCTTGTGAGCTTGTCAGAGGTTACCTTGATTTTTCACCACATGCCTGGAATATCATTCTGATAAAGAGGGGTGCTACATGGGTTCGAATGCTTGTTGATGCTTGCCGACCTCATGATATAAGAGAAGAGAAAGATCCTGAGTACTTTTGCAGGTATATACCTCTTAGTCGAAGCAAAGTCCCTCTTTCATCTGGTGGTCCTGTTCCTGATCATTCCTTTCCATCTCTCCCGACTTGTAATGAACTTGAGAATAAACATTTGACTACTTTAGTTCGGTGCAAATTTGGATCAGTTGAGGCGGCAGCAAAGGTGCGTACTTTGGAAGTGCAGGAGAGTTCAGCAGAGAAGGTTAAAAAATTTGAATATAATTGTTTGGGAGAAATTAGAATTCTTGATTCTTTAAAACACCCCTGCATAGTGGAGATGTATGGACACCAAATAACATGCAAATGGACTATCCCAGCGGATGGCAATCCTGAACATCGTGTATTGAGATCTGCAATTTTTATGGAGTATGTGGAAGCAGGCTCCTTAAAAAACTATCTGGAGAAGCTGGCAAAAGCTGGTGAAAAGCATGTTCCCGTGGAGTTGGCTTTATATATTGCCAAAGATGTCTCATGTGCTTTGTCGGAGCTGCACTCGAAGCACATAATTCATCGCGACATAAAAAGTGAAAACATTCTGTTTGATATTGATAGGAAGAGAGATGATGGAACTCCCACTGTGAAGCTTTGTGATTTTGATAGTGCAGTGCCACTAAGATCACCTTTACATGCATGCTGTATTGCTCATGTGGGAACACCTCCTCCTTCAGTGTGTGTTGGAACACCTCGGTGGATGGCTCCTGAGGTTGTGCGGACTATGTATAAGAAAAGCACTTATGGATTGAAAGTTGATATTTGGTCATTTGGATGTTTACTTCTGGAGATGCTGACCCTGCAAATTCCATATTATGGAGTACATGATTCACTCATGCATGATAGTTTGCAGATGGGTAAGCGACCACAATTAACTGATGAGCTGGAGGCTTTGAGTTCAATGAATGAACCCACAATGATTCAATCTGGTGAAGAGCTGGAAAAATCAGAAGTTGAGATTGACACGTTGAAGTTCCTTGTTGATTTGTTTCATAGTTGTATGAAAGAAAACCCAAATGAGCGACCTACAGCTGAAGAAATCCATGAAATGCTGGTTGGACACACTAGCTGCCTTGGGAAGATTTAG 3336 0.4218 MQILYSDEAPTAGGDFPENPEDNKKNSTSGDSSDSGIDEPVSLDVSGRSLEFPVPENAKEDSVESLYMYRNVYSLIPKSVGALVRLRTLKFFGNEINLFAPEFGNMTALERLQMKISSPGIGGLPLHKLKGLKELELSKGPPRPSAFPILTEIAALKCLTKLSICHFSIRYLPPEIGCLKSLEYLDLSFNKIKTLPTEITYLIGLISMKVANNKLVELPSAMTSLSRLECLDLSNNRLTSLGSLELASMHRLQNLNLQYNKLPSIFHIPSWICCNMEGNDRGRCKDDCSSCSVEMDVYESEVLENKETLSHGPHNTSSSILTSSSSSSRCFATRKSGKRWKRRHYLQQKARLERLNSSRKWKGVDLDRLPSKKIHKTSEPENMNSLASENCAETVSDNGSLDGSNRRSFSEEVNDNLIDNVNTDEVIIEKQFSQDDFCTSESRDEKDASICSLENGQSEQDEACLDSLKCISKSKRHSVQDIDNPKPCKSRKPIGDSSLVSCKYSKISFCGIEDHLSDGFYDAGRDRPFMPLESYEQNPCLASREVILLDRRRDEELDAVMLSARTLVYNLKQLSSINFPGSLAVVDNLQTASLLALFVSDHFGGSDRRAIIERMRKSVSGSNYNKPFVCTCSTGSSTSISASPGPVVNTMEDIALSEISGKSLDYIKKRRNSIIVPIGCVQYGVCRHRALLFKYLCDHMEPPVPCELVRGYLDFSPHAWNIILIKRGATWVRMLVDACRPHDIREEKDPEYFCRYIPLSRSKVPLSSGGPVPDHSFPSLPTCNELENKHLTTLVRCKFGSVEAAAKVRTLEVQESSAEKVKKFEYNCLGEIRILDSLKHPCIVEMYGHQITCKWTIPADGNPEHRVLRSAIFMEYVEAGSLKNYLEKLAKAGEKHVPVELALYIAKDVSCALSELHSKHIIHRDIKSENILFDIDRKRDDGTPTVKLCDFDSAVPLRSPLHACCIAHVGTPPPSVCVGTPRWMAPEVVRTMYKKSTYGLKVDIWSFGCLLLEMLTLQIPYYGVHDSLMHDSLQMGKRPQLTDELEALSSMNEPTMIQSGEELEKSEVEIDTLKFLVDLFHSCMKENPNERPTAEEIHEMLVGHTSCLGKI* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0570 1111 Pfam Leucine rich repeat 207 262 IPR001611 GO:0005515
Lja5g0570 1111 ProSiteProfiles Protein kinase domain profile. 788 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0570 1111 Pfam Ethylene-responsive protein kinase Le-CTR1 662 737 - -
Lja5g0570 1111 SMART LRR_typ_2 249 275 IPR003591 -
Lja5g0570 1111 SMART LRR_typ_2 179 202 IPR003591 -
Lja5g0570 1111 SMART LRR_typ_2 225 248 IPR003591 -
Lja5g0570 1111 SMART LRR_typ_2 83 105 IPR003591 -
Lja5g0570 1111 SMART serkin_6 788 1108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0570 1111 Pfam Protein kinase domain 816 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0570 1111 Gene3D Transferase(Phosphotransferase) domain 1 782 1106 - -
Lja5g0570 1111 PRINTS Leucine-rich repeat signature 182 195 - -
Lja5g0570 1111 PRINTS Leucine-rich repeat signature 225 238 - -
Lja5g0570 1111 SUPERFAMILY Protein kinase-like (PK-like) 800 1101 IPR011009 -
Lja5g0570 1111 ProSiteProfiles Leucine-rich repeat profile. 181 202 IPR001611 GO:0005515
Lja5g0570 1111 ProSiteProfiles Leucine-rich repeat profile. 227 248 IPR001611 GO:0005515
Lja5g0570 1111 SMART LRR_sd22_2 225 246 - -
Lja5g0570 1111 SMART LRR_sd22_2 249 270 - -
Lja5g0570 1111 SMART LRR_sd22_2 179 204 - -
Lja5g0570 1111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 921 933 IPR008271 GO:0004672|GO:0006468
Lja5g0570 1111 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 64 1105 - -
Lja5g0570 1111 SUPERFAMILY Cysteine proteinases 682 740 IPR038765 -
Lja5g0570 1111 SMART LRR_bac_2 179 198 - -
Lja5g0570 1111 SMART LRR_bac_2 202 221 - -
Lja5g0570 1111 SMART LRR_bac_2 225 244 - -
Lja5g0570 1111 MobiDBLite consensus disorder prediction 1 41 - -
Lja5g0570 1111 Gene3D Ribonuclease Inhibitor 33 291 IPR032675 -
Lja5g0570 1111 PANTHER BNAC08G43810D PROTEIN 64 1105 - -
Lja5g0570 1111 SUPERFAMILY RNI-like 43 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0570 Lja-Chr5 5016016 5022590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0570 808 1101 MAP Kinase Kinase Kinase AT2G24360 27.551 7.82e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Lja5g0570 Pkinase 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0570 - - mtr:MTR_4g068740 1709.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0570 5 5016016 5022590 Lja5g0570 5 5016016 5022590 ECH