Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0566 ATGGGTGCACCAAAGAAAAGCTCCGCTAGGGTTTCAGAGGACCCTGACGATTTGGTTAGGGTTCCATGGCAGGCCATTCTCTTGGCTGATAGCTTCACCACCAAGTTCAGACCTATCACGCTTGAACGCCCCAAGGTGTTATTGCCACTCGTGAATGTTCCGATGATCAATTACACCTTGACCTGGCTCGAATCCGCTGGTGTTGAAGAGGTTTTCGTTTTCTGCTGTGCTCATGCCAAGCAAGTGATTCAATATTTGGACAAATCCGAGTGGTTATCGCAACCGAATTTCACCGTGACCACTATCGAGTCGCAGAATTCTGTGAGCGCTGGAGACGCGCTCCGCGTGATCTATGAGCGCAATGTGATACATGGAGACTTTGTCCTGATCAGTGGAGATACTGTAAGCAACATGTCACTTACTCAGGCACTTCTAGAACATAAAGAAAGGAAGAAGAAAGATAGTAACGCTGTAATGACCATGGTCATCAAACGGTCAAAACCTAATCAAGCTATCCATCAGTCTCGACTTGGTACTGATGAAATTTTTATGGCCATTGATCCTGATACCAAGCAGCTTTTGTATTATGAGGATAAGGCAGACTATTCAAAAAGCACTTTACATCTTGATAAGTCATTGCTTGTTGATAATCCTTCCCTCTCTCTGCACCATGACAAGCAGGATTGTTACATTGACATATGCTCGCCGGAAGTCCTTAGCCTATTTACGGACAATTTTGACTACCAACATCTACGGCGTCATTTTGTCAAGGGATTGCTTGTTGATGATATAATGGGGTACAAAATCTTTGTTCATGAAATCCACTCAGACTATGCTGCAAGGATTGATAATTTCCGAAGTTACGACACTGTCAGCAAGGATATAATTCATAGATGGACATATCCATTTGTACCAGATGTTATGAATTTTGGCAAGACAGCTACTAAACTTGAACGACAAGGAATGTATCGTGCTTCAGAAATATCTCAGTCACAATCTGCTGTTATTGGCCCGTCCACAGCTATAGGATCTGGCACCAAAATTGGGTATAACACTAAAATTTCAAATTCTATTATTGGAGAAGGATGTAAAATTGGGTCAGATGTACTCATAGAGGGATGCTATATATGGGATAACGTCACCATAGAAGATGGCTGCAAACTTTGGCATGCAATTGTATGTGATGGAGCGACTATGAAGTCGGGAGCTGTTCTGGAACCTGGTGTTGTTTTGTCTTTCAAGGTTGTAGTTGGGCAGGGGTTTGTTGTTCCTCCTTATTCAAAAGTATCTCTATTACAGCAGCCAATTGAGGAAGATAGTGATGAGGAGCTCGAATATGCTGATAGTGCTAGTGCTATCACCAGTACAGTGGATAAGTCAGATGTAGAAATTGCTTACCAGGAATTGGATACACATTTTAGCCCTCCTTCAGAGCTAGGTATGGGTGGGGCTGGTTATGTTTGGCCAAAATGTGAAGGAGGCCATGAAGAAGAGTGGAGGCATTCAGTAGCGCCTATTACTGCAGATAAAATTTTGGAAGCACTGAAAGCTATTGAAGATGATTTGGAGTTAACACATGATGACACCATTCTCCCACCTTCTGGGGAGCTGAAACCTGATTCTAGTGATTCAGATGATGATGATAATGACGATTCTAGAGATGATTTTGATAAAGAGGTTGAAGCAACTTTTCTCAGGGGTGTGGATGAAAACATACAAGATAACCATTTGATCTTAGAAGTCAACTCCTTGAAGTTGTCATACAATAAGGTAACTGCTGATTGCGCTGGAGCTGTATTTTATGCAATGATGAAACATGCTATAGACATGCCCCATAGTTCAGCTGATAGCTTGATGAAGAATGTTCAGGATGTACTTAAACAATGGAAAAATGTTCTTGCACCCTATCTGAGTGATATGGATGAGCAGATTGAAGTAATACTAAAACTTGAAGAAATGTGTCTGGAATCTGCGAAGGAGTATGCTCCATTGTTCACAAAGATATTGCACTTCATGTATGAAGAAGATATTGTAGACGAAGATGCTATTTTGAGTTGGGAAGATGAGAAGAAAGACGCAGATGAATATGATAAAGTTTTTGTTAAGCAGGCCCAAAAATTAATTCAATGGCTAAAAGAGGCGCCTGAAGAAGACGACGATGACGAGTAG 2169 0.4154 MGAPKKSSARVSEDPDDLVRVPWQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLTWLESAGVEEVFVFCCAHAKQVIQYLDKSEWLSQPNFTVTTIESQNSVSAGDALRVIYERNVIHGDFVLISGDTVSNMSLTQALLEHKERKKKDSNAVMTMVIKRSKPNQAIHQSRLGTDEIFMAIDPDTKQLLYYEDKADYSKSTLHLDKSLLVDNPSLSLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIHSDYAARIDNFRSYDTVSKDIIHRWTYPFVPDVMNFGKTATKLERQGMYRASEISQSQSAVIGPSTAIGSGTKIGYNTKISNSIIGEGCKIGSDVLIEGCYIWDNVTIEDGCKLWHAIVCDGATMKSGAVLEPGVVLSFKVVVGQGFVVPPYSKVSLLQQPIEEDSDEELEYADSASAITSTVDKSDVEIAYQELDTHFSPPSELGMGGAGYVWPKCEGGHEEEWRHSVAPITADKILEALKAIEDDLELTHDDTILPPSGELKPDSSDSDDDDNDDSRDDFDKEVEATFLRGVDENIQDNHLILEVNSLKLSYNKVTADCAGAVFYAMMKHAIDMPHSSADSLMKNVQDVLKQWKNVLAPYLSDMDEQIEVILKLEEMCLESAKEYAPLFTKILHFMYEEDIVDEDAILSWEDEKKDADEYDKVFVKQAQKLIQWLKEAPEEDDDDE* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0566 722 Pfam Nucleotidyl transferase 25 166 IPR005835 GO:0009058|GO:0016779
Lja5g0566 722 ProSiteProfiles W2 domain profile. 550 721 IPR003307 GO:0005515
Lja5g0566 722 SMART 542_3 630 717 IPR003307 GO:0005515
Lja5g0566 722 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 17 304 IPR029044 -
Lja5g0566 722 SUPERFAMILY Nucleotide-diphospho-sugar transferases 21 369 IPR029044 -
Lja5g0566 722 CDD W2_eIF2B_epsilon 558 714 IPR044123 GO:0005085|GO:0031369
Lja5g0566 722 MobiDBLite consensus disorder prediction 541 555 - -
Lja5g0566 722 Pfam eIF4-gamma/eIF5/eIF2-epsilon 642 721 IPR003307 GO:0005515
Lja5g0566 722 Gene3D Hexapeptide repeat proteins 316 435 - -
Lja5g0566 722 SUPERFAMILY Trimeric LpxA-like enzymes 267 429 IPR011004 -
Lja5g0566 722 MobiDBLite consensus disorder prediction 524 555 - -
Lja5g0566 722 Gene3D - 543 722 - -
Lja5g0566 722 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 10 722 - -
Lja5g0566 722 CDD LbH_eIF2B_epsilon 341 419 - -
Lja5g0566 722 CDD eIF-2B_epsilon_N 24 239 IPR035543 -
Lja5g0566 722 SUPERFAMILY ARM repeat 555 714 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0566 1 714 Eukaryotic Initiation Factors Gene Family AT2G34970 62.431 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0566 K03240 - gmx:100784894 1226.85