Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0564 ATGGAGGAACAGAATCACTGCTTCGACTGCCTCCAACGTCGAATCAACTCGGATTTCTCTGACCAACTCGTCTTCAACTATGCCATCTCCACTTCTGCTTTTCCTTTCGGCTCCTCAGCTATCGTTCATGTTTCTGGTACTGAAGCATCGGGCAGTCAATTCATCTTGCAGTACATGCCCGGTCACGACAAGAATTGTTTTGTCAATTATGTAAATGAATATATTTTGGATAGTAGTAGTGAAAGCACTAGGAGTAATGATCATGATATTGGAGGCAATCAATATAATGATGAGATTAATGGTGGAATTGCTATATCTGTTGCTTCTGAAACTGGAAATGCTACTTCCGGAAACACGTCGTGTAATCATTCTGGAAGGTTTTCTTGCTCCAGGACAATCACCTCACTTGCCCCCATTGCTCGGGTCGGAATGTCTTCGTATTCTACGTTTCAAGAGGTTGCCGCTGATTTCTTGTCCGGTTTAAGCGAAGATCATGTGTTAGAGTCGCTTGATCTCTTCATTGCAGGGAAAGCGTCTGGACGGGACTGTGTAAATTTTCTTAGGTTACTTGGGCTGCCTTCATTTGAGAAAGATACTTTTCCAGGCTCTTTGAGGCATCCAAACATAGCTCCTGTTCTTGGAATTTTGAAAACATCTGATTACATTAACATGATGCTTCCAAAGACTCCATACAACTTGGAAAGTATTCTTCATTTTAACCCCGGTGCGTTGAAATCTGATTGGAATAGAAGATTTCTTATATATCAGCTACTCTCAGCCTTATTGTACTTGCACGGTCTAGGGGTTTCGCATGGTAATATATGCCCTTCCAATATCTTGTTGACGGACTCGTTGTGGTCTTGGCTGAGATTGTGGAATGAACCTGTGTTGGAATCAAGTTTAACTTCGCAAAAGAGTGAAAGGGTTGATTCTAAACCTGCAAAAACCGGTTGCTGTAATGGTGGCTGTCATTCTAATGATCTTTATGCTGATCTGAAGCTTTCTCCATCGATAGATTGGAATTGTAGCTTTCATCAGTGGTGGAGAGGGGAACTAAGTAATTTCGAGTATTTACTTATCTTAAACAGACTAGCAGGAAGAAGGTGGGGTGACCATACATTTCATCCTGTAATGCCTTGGGTAATTGATTTTAGCTCCAAGCCTGATGATAATTGTGATGCAGGATGGCGGGACTTAAACAAGAGCAAATGGCGCCTGGCAAAAGGTGATGAACAGTTGGATTTCACCTATTCAACATCTGAAATCCCTCATCATGTATCAGATGAATGTCTGTCTGAATTGGCTGTCTGCAGTTATAAAGCAAGAAGGCTGCCTTTGAGCGTTCTTCGAATGGCTGTTCGTTCAGTGTATGAACCTAATGAATATCCTTCCACAATGCAAAGGCTTTATCAATGGACCCCTGATGAATGCATTCCGGAGTTTTACTGTGATGCCCTAATTTTTAGGTCAATACATGATGGTATGGCTGATTTGGCTGTACCTTCTTGGGCAGAGAGTCCCGAGGATTTCATTAAATTGCACCGTGACGCATTAGAAAGTGATAGGGTGTCATTTCAACTACACCATTGGATAGATATAATCTTTGGGTACAAAATGTCTGGCCACGCAGCAGTTATTGCTAAGAATGTTATGCTTCCTTTATCGGAACCCACAATGCCAAGATCTACTGGACGTCGTCAGCTCTTTACACAACCGCACCCCATTCGTCACGCTACTTCTAGAATAACACGTCATGGTTCCAACAAATATGCCAAAGTTTGGAGTGAAGCACATGAAATGCAGCGAGAGACATCTCTTCTATCTGAAACTGCTTATCTACAAGAACTAGAGCAAGCATCTGCATTTTCAGAACATGCTAGGCATTTGAATGCTTGTTATCGTTATCCACTAAATCATATTAAAGGGAAGAACATCTCATCTTTGGGAGATCCAGCACCAGAGACATTTAGTAAAAACATAAGTGAACTATCTTTGGTAAACAGAAATTATTGGGTTCCATATAAAATGAATCTGATCTCCTTTCTTCAACACATGAAAGAGGAAGATGAAGGCTCCTCAGGATATCCAGACTTTCTGCTTTGGAGGCAGAAATTATCTTCTTCAAGACTTGACTCTGAAGATGTTGCTAGGGACATATTTTCTGTTGGTTGTCTCTTAGCTGAGCTTCATCTTTGCAGGCCCCTCTTCGATTCAATTTCATTGGCAATGTACTTGGAGGATGGAGCCTTACCAGGATTTCTACAGGAACTGCCTCCTCATGTTAGATTACTTGTTGAAGCATGCATCCAAAAGGATTGGACGAGGAGGCCATCAGCCAAAATTCTTCTTGAATCCCCTTATTTCCCAAAGACAGTCAAGTCCTCCTACTTGTTTCTTGCCCCACTTCAGCTTGTATCTAAAGATGAAACTCGGCTCCGTTATGCTGCAAATCTTGCAAAGCAGGGGGCTCTCAGAGAAATGGGTGCATTTGCAACTGAAATGTGTGCTACTTATTGCTTACCACTTATAGTGACCGCTGTTAATGATACCGAAGCTGAATGGGCATATATACTACTGGAGGAACTAATGAAATGCTTAACAGCACAAGCAGTAAAAACATTAATATTGCCAACCGTACAGAAAATTTTACAGACAGCAGGTTGTTTGCATTTAAAGGTTTCCCTTTTACAAGATTCATTTGTACGGGAAATATGGAATCGAGTTGGTAAACAGGCATACCTGGCAACTGTTCACCCGTTGGTCTTGTCAAATTTGTATATTTATCCAGATAAAAGTTCAGCTGCCTCTGCTTCAGTGCTTCTAATCGGTTCTAGTGAAGAGATTGGTGTTCCGATTACCATTCATCAGACCATCTTGCCCCTTGTTCACTGCTTTGGGAAAGGACTGTGTTCAGATGGCCTTGATGTGCTAGTCAGAATTGGTGGTATATTTGGGGAATCCTTTATTGTTAAACAGATGCTACCATTGCTGAAAAATGTTGTTCGTTCCTTCACTGATGTGTCATGCATGAATAAGCCTGATCCTGTTCAGAGTTGGAGTGCTTTAGCACTTATTGATTGTATGATCACTTTGGATGGCCTTGCAGCTTTCTTGACAGAAGAGGTCATTGTAAAAGAGCTGCTAGCAGACGTAAGTTGCATACATATTGGGATTCTCATGCAGAAACATATGGAAATTGCAGTGCTTCAGGTTGCTGCTACTACTCTCTTTGGAATTTGTCAGCGGATTGGGGCAGATTTGACAGCATTGCATATTCTTCCAAAGCTTAAAGAATTATTTGATGAACTTGCTTTCTCCCAGGAAATTTCTAAAGGTTCGACTACTGTTGGCAGAAACTTGAAGGTTACCAAATTAAAATTTGGAGGGGACTTGCAAATTGAAAGTCGTATGGACCTAGTGTTGCTTCTCTATCCTTCCTTTGCATCTCTTCTTGGGATAGAGAAACTTCGTCAATGTTGTACTACATGGTTGCTTCTTGAACAATTTCTTCTACGCCATCATAATTGGAAGTGGGAATATGCAGGAGAATCATCAAAAAATGGCTCAGAAAATTTTATTGCCAGAAGACATGCGATTTCCCGGGGATTCACATCTGAATACAATCCAGCAAAGCTGTTGCTTAATGGTGTTGGATGGTCAATTCCACAATCCCAAGGTAGTAAAAGTGCCAAAAATTTGAATCCTCAGAGACGGTCATTCAAAGTTCAGCAGAGCCCAGTAGTAATGCATGAAGGAATGTCATGCCAAGTGAACCTTGAACCCTGGTTTTGGTTCCCTAGTCCATCCACCATCTGGGATGGGCCTGAATTTCTTGGGCGGGTTGGGGTTCAGAAAGAAGACCTTCCATGGAAGATTAGAGCATCTGTACTTCACTCTATACGGGCACATCATGGAGCAGTGAGGTCTCTGGCTGTTGATCAGGATGAATGTATAGTTTTTACTGCAGGAATTGGCCAAGGATATAAAGGCACTGTTCAGAAGTGGGAATTAAGCCGAACTAACTGTCTGTCAGGCTATTATGGCCATGAGGAGGTGGTAAACGATATTTGCATCTTATCTTCTAGTGGAAGAGTGGCATCTTGTGATGGAACAATTCATATTTGGAATAGTCAAACAGGGAAGCAAATATCAGTTTTTGCCGAGTCCCAAACAGAATCTGGCTATCCTACAAACCATCAACCCTCTGTGCCAAAAATTAACAGTGACCAGGCAAATGTCCTTAATTTGAATACACTATCAAGTGGAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGTATCTATTAGACTCTGCTGAAACTCTTGTAGTCGGCACTGGAAATGGTTCTCTCAGGTTTATTGATGTTGCTCGAGGTCAAAAGCTTCATATTTGGAGGGGGGAATCTAATGATTCTAGTTTTCCTTCACTTATTTCTGCCATTTGTTCCTCGGGTTCTAACAAAATGCAAGCAGGTGGTATTCCCACTTTGTCATCTTTGATTGCAACTGGACTAAGTTCTGGTCACTGTAAATTATTTGATGCTAAGAGTGGAAATGTCATTGCCTCTTGGCGAGCTCATGATGGATATGTAACAAAGTTTCAACAATGTCATTGTTTACAGTTGGCATCACATGACGAGCATCTGCTCATTTCCAGCTCTCTGGACAGAACTTTAAGAGTCTGGGACTTAAGAATGAATTTGCCATTGCAGCCCATTATTTTCAGAGGTCATTCTGATGGCATATCCAATTTCTGCATTTGGGGCCAAGATGTTATTTCAATTTCTCGAAATAGGATCGGGCTTCTTTCCTTGTCTAAATGTGCCAGTGAAACAGATGGGCAGCATCACATTATCCCCCAGAAACTCTACGTTTCTGATAATGGAATGAGAAGCTTGTCAGCATTATCAAGCATTAGTATACTACCATTCTCTCGATTGTTTCTGGTTGGAACAGAAGATGGTTATTTGAGAATTTGTTGTTAA 4995 0.4132 MEEQNHCFDCLQRRINSDFSDQLVFNYAISTSAFPFGSSAIVHVSGTEASGSQFILQYMPGHDKNCFVNYVNEYILDSSSESTRSNDHDIGGNQYNDEINGGIAISVASETGNATSGNTSCNHSGRFSCSRTITSLAPIARVGMSSYSTFQEVAADFLSGLSEDHVLESLDLFIAGKASGRDCVNFLRLLGLPSFEKDTFPGSLRHPNIAPVLGILKTSDYINMMLPKTPYNLESILHFNPGALKSDWNRRFLIYQLLSALLYLHGLGVSHGNICPSNILLTDSLWSWLRLWNEPVLESSLTSQKSERVDSKPAKTGCCNGGCHSNDLYADLKLSPSIDWNCSFHQWWRGELSNFEYLLILNRLAGRRWGDHTFHPVMPWVIDFSSKPDDNCDAGWRDLNKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYEPNEYPSTMQRLYQWTPDECIPEFYCDALIFRSIHDGMADLAVPSWAESPEDFIKLHRDALESDRVSFQLHHWIDIIFGYKMSGHAAVIAKNVMLPLSEPTMPRSTGRRQLFTQPHPIRHATSRITRHGSNKYAKVWSEAHEMQRETSLLSETAYLQELEQASAFSEHARHLNACYRYPLNHIKGKNISSLGDPAPETFSKNISELSLVNRNYWVPYKMNLISFLQHMKEEDEGSSGYPDFLLWRQKLSSSRLDSEDVARDIFSVGCLLAELHLCRPLFDSISLAMYLEDGALPGFLQELPPHVRLLVEACIQKDWTRRPSAKILLESPYFPKTVKSSYLFLAPLQLVSKDETRLRYAANLAKQGALREMGAFATEMCATYCLPLIVTAVNDTEAEWAYILLEELMKCLTAQAVKTLILPTVQKILQTAGCLHLKVSLLQDSFVREIWNRVGKQAYLATVHPLVLSNLYIYPDKSSAASASVLLIGSSEEIGVPITIHQTILPLVHCFGKGLCSDGLDVLVRIGGIFGESFIVKQMLPLLKNVVRSFTDVSCMNKPDPVQSWSALALIDCMITLDGLAAFLTEEVIVKELLADVSCIHIGILMQKHMEIAVLQVAATTLFGICQRIGADLTALHILPKLKELFDELAFSQEISKGSTTVGRNLKVTKLKFGGDLQIESRMDLVLLLYPSFASLLGIEKLRQCCTTWLLLEQFLLRHHNWKWEYAGESSKNGSENFIARRHAISRGFTSEYNPAKLLLNGVGWSIPQSQGSKSAKNLNPQRRSFKVQQSPVVMHEGMSCQVNLEPWFWFPSPSTIWDGPEFLGRVGVQKEDLPWKIRASVLHSIRAHHGAVRSLAVDQDECIVFTAGIGQGYKGTVQKWELSRTNCLSGYYGHEEVVNDICILSSSGRVASCDGTIHIWNSQTGKQISVFAESQTESGYPTNHQPSVPKINSDQANVLNLNTLSSGILSSAFDSSLYTCMYLLDSAETLVVGTGNGSLRFIDVARGQKLHIWRGESNDSSFPSLISAICSSGSNKMQAGGIPTLSSLIATGLSSGHCKLFDAKSGNVIASWRAHDGYVTKFQQCHCLQLASHDEHLLISSSLDRTLRVWDLRMNLPLQPIIFRGHSDGISNFCIWGQDVISISRNRIGLLSLSKCASETDGQHHIIPQKLYVSDNGMRSLSALSSISILPFSRLFLVGTEDGYLRICC* 1665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0564 1664 ProSitePatterns Trp-Asp (WD) repeats signature. 1553 1567 IPR019775 -
Lja5g0564 1664 Gene3D Transferase(Phosphotransferase) domain 1 681 793 - -
Lja5g0564 1664 SUPERFAMILY Protein kinase-like (PK-like) 714 801 IPR011009 -
Lja5g0564 1664 Pfam WD domain, G-beta repeat 1341 1376 IPR001680 GO:0005515
Lja5g0564 1664 Pfam WD domain, G-beta repeat 1522 1566 IPR001680 GO:0005515
Lja5g0564 1664 SUPERFAMILY Protein kinase-like (PK-like) 203 286 IPR011009 -
Lja5g0564 1664 PANTHER GH12955P 1 1664 - -
Lja5g0564 1664 SMART Beach_2 344 576 IPR000409 -
Lja5g0564 1664 Gene3D BEACH domain 338 579 IPR036372 -
Lja5g0564 1664 ProSiteProfiles Trp-Asp (WD) repeats profile. 1547 1568 IPR001680 GO:0005515
Lja5g0564 1664 Pfam Beige/BEACH domain 346 557 IPR000409 -
Lja5g0564 1664 SUPERFAMILY WD40 repeat-like 1285 1662 IPR036322 GO:0005515
Lja5g0564 1664 CDD PKc 203 284 - -
Lja5g0564 1664 CDD Beach 346 576 IPR000409 -
Lja5g0564 1664 ProSiteProfiles BEACH domain profile. 332 601 IPR000409 -
Lja5g0564 1664 SMART WD40_4 1629 1664 IPR001680 GO:0005515
Lja5g0564 1664 SMART WD40_4 1293 1336 IPR001680 GO:0005515
Lja5g0564 1664 SMART WD40_4 1339 1376 IPR001680 GO:0005515
Lja5g0564 1664 SMART WD40_4 1520 1566 IPR001680 GO:0005515
Lja5g0564 1664 SMART WD40_4 1461 1517 IPR001680 GO:0005515
Lja5g0564 1664 SMART WD40_4 1417 1458 IPR001680 GO:0005515
Lja5g0564 1664 SUPERFAMILY BEACH domain 335 576 IPR036372 -
Lja5g0564 1664 Gene3D - 1498 1664 IPR015943 GO:0005515
Lja5g0564 1664 Gene3D Transferase(Phosphotransferase) domain 1 199 287 - -
Lja5g0564 1664 Gene3D - 1287 1497 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0564 Lja-Chr5 4965377 4979374 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Cr-3 Lja5g0564 Beach 2.5e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0564 K17601 - gmx:100809116 2868.95