Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0559 ATGAATCCTCAGGCTCAGGGACGAATGAAGAAAGAGGAGTTTGTAGGACAAAGTTCTTCCTATTCTGGTGGCGTTCCTCCCCAACCAATGGAGTGTCTTCAAGAAACTGGTCCTCCACCTTTCCTCACAAAAACATACGACATAGTTGATGACCCTTCCACAAATCATATAATTTCATGGAGCACAGGGAATAACAGCTTCGTAGTGTGGAACCCACAGGCCTTTTCCATAAGCCTTCTCCCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTCAACACCTATGGGTTTAAGAAGGTTGATCCAGATAGGTGGGAGTTTGCCAATGAGATGTTTCTTAGAGGACAGAAAGATCTTTTGAAGAATATTAGAAGGAGGAAAGCCAATCAATCTCAGGCAATGCAGCAAGCTCTAGACCCTTGTGTTGAGGTGGGGTGGTTCGGATTAGACGGAGAAGTTGATCGGTTAAGGCGTGACCGGCAAGTTCTCATGGTGGAGTTGGTGAAACTCAGACAACAGCAACAGAGTACTAGAGCTCACATTCAAGCAATGGAAGGAAGGATTAAAAGGACAGAGCAGAAACAGCAACAGATGATGAGTTTCTTGGCAAGAGCAGTGCAAAATCCCAATTTCTTGCAGCAATTAGCTCAACAAAAGGAATGGAGAAAGGAATCGGAGGAGGCAGTTTCCAAGAAGAGAAGGCGACCTATTGATCAAGGGCCATGTGAATTAGAACATGCTGAAGATAGCTCTGAATTTGTTAAACTTGAACAATCACATGAATACAGTGACAAATTAGTAGAGTTTGAGGTATCTGACTTGGATTATGCTTTGAATATTGAGGGACAATGTGGAAGCCAGAACATGATGAACGTGGAGCAAGATCATGTTCATCTTAGAAGAAGTAGTGATCAAAACATTGATGAAGTGTTTTGGCAAGATTTGCTTGATGAGGGTATTGGTGATCAACATGTGCTAGATGTTGAAGATGTAGATGTATTGGCTGAGCAACTTGGTTATTTGGCCTCTGGTCCAAATAGGAGGCTGTCATAG 1065 0.4291 MNPQAQGRMKKEEFVGQSSSYSGGVPPQPMECLQETGPPPFLTKTYDIVDDPSTNHIISWSTGNNSFVVWNPQAFSISLLPRFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEMFLRGQKDLLKNIRRRKANQSQAMQQALDPCVEVGWFGLDGEVDRLRRDRQVLMVELVKLRQQQQSTRAHIQAMEGRIKRTEQKQQQMMSFLARAVQNPNFLQQLAQQKEWRKESEEAVSKKRRRPIDQGPCELEHAEDSSEFVKLEQSHEYSDKLVEFEVSDLDYALNIEGQCGSQNMMNVEQDHVHLRRSSDQNIDEVFWQDLLDEGIGDQHVLDVEDVDVLAEQLGYLASGPNRRLS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0559 354 SUPERFAMILY "Winged helix" DNA-binding domain 37 130 IPR036390 -
Lja5g0559 354 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 24 332 - -
Lja5g0559 354 SMART hsfneu3 37 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g0559 354 MobiDBLite consensus disorder prediction 1 26 - -
Lja5g0559 354 Pfam HSF-type DNA-binding 41 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g0559 354 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 332 IPR027725 -
Lja5g0559 354 Coils Coil 157 177 - -
Lja5g0559 354 Gene3D - 33 131 IPR036388 -
Lja5g0559 354 ProSitePatterns HSF-type DNA-binding domain signature. 80 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g0559 354 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g0559 354 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g0559 354 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0559 Lja-Chr5 4932546 4934617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0559 27 347 HSF AT3G22830 55.493 9.39e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja5g0559 HSF_DNA-bind 2.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0559 K09419 - gmx:100809515 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0559 5 4932546 4934617 Lja5g0559 5 4932546 4934617 ECH