Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0556 ATGAACGGCGGCACCACCACCACCACCACCACCGCCACCTTCCGATCCATCCTCGACAAACCCCTCAAACACCTCACCGAGGATGACATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGGGATGCGCAGACCTTCCTGGAACAAATCGCAAGCGATCCAGCAGGTCATTTCCCTCAAAGCGCTTCTAGAACCCACCGACGAAGATTCTCCCGCCGCCGTGCACCGCCACTACCACCACCACCAGCAACCTCCCCATGCCTCCTCTCGAGGGAGGAATCTGAATGAAGCTCCGGCGACGGCACCGGTTGCGGAGGAGGCTGGTTTTCAGGCTGCCGCCGAAGAGCCGCAGAAATCTCCGTCTGCGGAGAAACTTCCAGAGACGAATGATGCCAATGTTGTTAGCCCCAGAGGTTGTGCATCTAGTGGATCATTTGGGCAAATGACAATTTTCTACTGTGGTAAGGTGAATGTCTATGATGGAGTCTCACCTGATAAGGCACGATCGATTATGCAGCTTGCAGCAAGCCCAGTCCAATGTCCTCAGGATGACCCTTCAAATAAAAATGCAGCAGTTTGGGCTTCTACTTGCCCTTCACTGATGGATAAGGATGCGCTCTTCCCCGTTGATACAGCAATCCTTCAGGTTGCTCAAACAGATAAGATGGTGGAATATCCTCTGCAATACAGGGAGAAAGTGAGCATACCTCGCGATGCTGATGTAGAGGGTCAAGCAAGCAGAAAAGTGTCAGTGCAGCGGTATCTTGAAAAGCGAAAAGACAGGGGAAGATTGAAGGGCAAGAAATCGACCAGCGTAACTTCATCTAACTTCGACATGTATGTGAACCTTCCAGTGAAGGGCCATGCCTCAAATGGGAATTCAAGCCGTAGTAGCACTAGCTCTCCTCCACAGCCTAGATTGCCTGTAGTTTCCGGTGGCTCAGCTGACAATCAGCTAAAAGTTTCCCTTCCCATTGATCTCAATGACAAAGATGTTCAAGGATCCTAA 1023 0.5103 MNGGTTTTTTTATFRSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPTDEDSPAAVHRHYHHHQQPPHASSRGRNLNEAPATAPVAEEAGFQAAAEEPQKSPSAEKLPETNDANVVSPRGCASSGSFGQMTIFYCGKVNVYDGVSPDKARSIMQLAASPVQCPQDDPSNKNAAVWASTCPSLMDKDALFPVDTAILQVAQTDKMVEYPLQYREKVSIPRDADVEGQASRKVSVQRYLEKRKDRGRLKGKKSTSVTSSNFDMYVNLPVKGHASNGNSSRSSTSSPPQPRLPVVSGGSADNQLKVSLPIDLNDKDVQGS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0556 340 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 316 IPR040390 -
Lja5g0556 340 MobiDBLite consensus disorder prediction 288 340 - -
Lja5g0556 340 MobiDBLite consensus disorder prediction 292 312 - -
Lja5g0556 340 ProSiteProfiles Tify domain profile. 146 181 IPR010399 -
Lja5g0556 340 Pfam Jas motif 249 266 IPR018467 -
Lja5g0556 340 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 10 316 - -
Lja5g0556 340 Pfam tify domain 152 180 IPR010399 -
Lja5g0556 340 MobiDBLite consensus disorder prediction 127 143 - -
Lja5g0556 340 MobiDBLite consensus disorder prediction 73 143 - -
Lja5g0556 340 SMART tify_2 146 181 IPR010399 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0556 1 287 Tify Gene Family AT4G14720 47.826 1.26e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lja5g0556 tify 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0556 - - gmx:100808970 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0556 5 4910790 4918063 Lja5g0556 5 4910790 4918063 ECH