Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0553 ATGGCTGGTAGTGGTAGACTCCCTGGTGTTGGTGTTCCACCAAGGAGGAGATCAGAGCATCATCCTAGATATCATCATGAACACCACCGTAACTCTAATTACCTCGCCGATTCATCAGTCACTGCTTTGGATGAAACTGCTATTCAGGCGAGGCAACGGTTGCAGAAGAAGCTTGGACACTTCTTTTCCTCTTTCAGGTCAGATGATAATCCTAACAAAGAAGTTAGTTTACAGAAGAAGGATGCAGGGTTAGGTCGGAAGTTATTAGAAAGCTCATGGTTGTTGCGTGGCACCAAGTTTAAGAAAGAGAGAAAAGTTTGTGCAGTTTGCTTAGAAGATTTCCAGCAAAAGCAGCAGGTTATGAACCTTTCTTGCTCCCACAAGTACCATTCAGCATGTCTTCTTCCCTGGCTTGAAGCTCACCCCCATTGTCCCTGCTGTAGAACCTCAGTTCAGTAA 459 0.451 MAGSGRLPGVGVPPRRRSEHHPRYHHEHHRNSNYLADSSVTALDETAIQARQRLQKKLGHFFSSFRSDDNPNKEVSLQKKDAGLGRKLLESSWLLRGTKFKKERKVCAVCLEDFQQKQQVMNLSCSHKYHSACLLPWLEAHPHCPCCRTSVQ* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0553 152 MobiDBLite consensus disorder prediction 1 30 - -
Lja5g0553 152 SUPERFAMILY RING/U-box 106 151 - -
Lja5g0553 152 CDD RING-H2_PA-TM-RING 106 148 - -
Lja5g0553 152 Pfam Ring finger domain 106 148 IPR001841 -
Lja5g0553 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Lja5g0553 152 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 29 150 - -
Lja5g0553 152 SMART ring_2 107 147 IPR001841 -
Lja5g0553 152 ProSiteProfiles Zinc finger RING-type profile. 107 148 IPR001841 -
Lja5g0553 152 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 29 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0553 Lja-Chr5 4874924 4876578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0553 99 151 C3H Transcription Factor Family AT1G49850 43.396 5.51e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0553 - - lja:Lj1g3v0112670.1 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0553 5 4874924 4876578 Lja5g0553 5 4874924 4876578 ECH