Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0552 ATGGGGAAGACAGGCAAATGGCTTAAAAACTTTTTATCTGGGAAGAAAGACAAGGAGAAGGAGAAGGAAAAATCTGCAAACAACCTGAATTTTTCCAATGGAACAGAAAATCCAACTACTCCAATTTCGACAACCCCGAAAGAGAAGAAGAGATGGAGCTTTAGAAGATCATCAGCAACGACAGCAGCCACAGCCACATCCACACCAACAACAACACCTTGTAAGGAATTGAATTTGGTTGAAACAAATGTCACTGCTTCACAGACAGTGCAAACGGCTGTGGATGTTCAGAATGAGCAGAGAAAGCATGCTGCTGCTACAGCAGCTGCAGCTGATGCAGCTGTGGCGGCTGCACAGGCTGCAGCTGCAGTGATCCGCATGGCTTCTGGTTCCAATGGAGCATCTAAAAGTGTTGAAGAGGCAGCAGCCATTAAAATCCAATCTGTCTTTCGGTCTCACCTGGCAAGAAAAGCATTGTGTGCTCTGAGAGGACTAGTGAAGTTGCAGGCACTAGTAAGGGGTCATCTGGTGAGAAAACAGGCTAAGGAAACACTGAGATGCATGCAGGCTTTGTTGACAGCACAAGCCAGAGCTCGTGCTCAGAGGATCCGAATGGTGTCAGAAGGAAAGCCTAATCAAAACCAATCAGCACAAAGAATCACTACAGAGAATGATTTATTCAGGCACATATATAATGAAATTGATAGAAACTTTGAAGATAACATCAAGATTGTGGAGATGGATGTTTGTGAATCAAAATACAACTCTAGAAGCAGAAACAGTGTATATCATCATGATCATGGACATCAAGAGCATTCTGAAAACCATAGATTTTCCACTCATTATACACCAAATGGCTCATACTCAAAGGATGAAAACAACAAGGTATCACCAGCTCCATCAAGTTTGACAGAGTTGAGTCCAAAAGCCTGCAGTGGCCATTTTGAGGAATGCTTCAGCACAGCCCAGAGCAGCCCTCAGTACTACTCCGCTATGTCCAGAGTCGATGATTCGAAGCATCCTTTTGCTTTCCCTAAGCCGCCTTATCCAGAATCCATGATGTCCTATGACTACCCTTTGTTCCCAAATTACATGGCTAACACAGAATCATCAAGGGCCAAAGTCAGATCACACAGCGCACCGAGACAAAGGCCGGATTCATTTGAGAGGCAACCGAGCCGTCGAAGGCCTTCAATTGAAGGAAGGAATGTGCCAAGACCAGTTAGGATGATGCAGAGGTCATCTTCACATGTGGGTGCCACTGCTCAGAACTACCAATATCCATGGTCAATCAAGCTTGACAGATCTGCAGTTTCACTCAAAGATAGTGAGTGTGGCTCCACAAGTACAGTGCTCACAAACACTAATTACTGCAGATCTCTTGTTGCATATGATGCACATGAAGATAGGTACTGA 1416 0.4463 MGKTGKWLKNFLSGKKDKEKEKEKSANNLNFSNGTENPTTPISTTPKEKKRWSFRRSSATTAATATSTPTTTPCKELNLVETNVTASQTVQTAVDVQNEQRKHAAATAAAADAAVAAAQAAAAVIRMASGSNGASKSVEEAAAIKIQSVFRSHLARKALCALRGLVKLQALVRGHLVRKQAKETLRCMQALLTAQARARAQRIRMVSEGKPNQNQSAQRITTENDLFRHIYNEIDRNFEDNIKIVEMDVCESKYNSRSRNSVYHHDHGHQEHSENHRFSTHYTPNGSYSKDENNKVSPAPSSLTELSPKACSGHFEECFSTAQSSPQYYSAMSRVDDSKHPFAFPKPPYPESMMSYDYPLFPNYMANTESSRAKVRSHSAPRQRPDSFERQPSRRRPSIEGRNVPRPVRMMQRSSSHVGATAQNYQYPWSIKLDRSAVSLKDSECGSTSTVLTNTNYCRSLVAYDAHEDRY* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0552 471 MobiDBLite consensus disorder prediction 1 72 - -
Lja5g0552 471 MobiDBLite consensus disorder prediction 56 72 - -
Lja5g0552 471 MobiDBLite consensus disorder prediction 260 278 - -
Lja5g0552 471 Pfam Protein of unknown function (DUF4005) 326 401 IPR025064 -
Lja5g0552 471 ProSiteProfiles IQ motif profile. 139 167 IPR000048 GO:0005515
Lja5g0552 471 MobiDBLite consensus disorder prediction 27 47 - -
Lja5g0552 471 PANTHER IQ-DOMAIN 5-RELATED 1 448 - -
Lja5g0552 471 Pfam IQ calmodulin-binding motif 141 159 IPR000048 GO:0005515
Lja5g0552 471 Pfam IQ calmodulin-binding motif 166 182 IPR000048 GO:0005515
Lja5g0552 471 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 448 - -
Lja5g0552 471 MobiDBLite consensus disorder prediction 260 302 - -
Lja5g0552 471 MobiDBLite consensus disorder prediction 369 417 - -
Lja5g0552 471 MobiDBLite consensus disorder prediction 375 402 - -
Lja5g0552 471 SMART iq_5 161 182 IPR000048 GO:0005515
Lja5g0552 471 SMART iq_5 138 160 IPR000048 GO:0005515
Lja5g0552 471 MobiDBLite consensus disorder prediction 10 26 - -
Lja5g0552 471 ProSiteProfiles IQ motif profile. 163 190 IPR000048 GO:0005515
Lja5g0552 471 MobiDBLite consensus disorder prediction 279 302 - -
Lja5g0552 471 Gene3D - 138 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0552 Lja-Chr5 4862001 4864808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0552 1 459 IQD Protein Family AT4G14750 44.025 1.61e-99 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0552 - - gmx:100817667 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0552 5 4862001 4864808 Lja5g0552 5 4862001 4864808 ECH